3D Segmentation Using Spheres

[damien.schnebelen]

Hi everybody,

After the analysis of 2D datasets of images by sripting in Fiji (Python), I want to pass to a 3D representation. To do so, I plan to use the 3D viewer plugin or the volume plugin. Nonetheless, the final aim being segmentating the datasets using spheres in 3D, I want to know if such functions are available in those plugins or in other ones.
If it is the case, may somebody give me the procedures to obtain this result ?

Thanks by advance,
Damien, student.

[Albert Cardona-2]

In the Fiji paper (Schindelin et al 2012) I wrote a script to segment cell nuclei and show them in 3D as spheres alongside the orthoslices of the confocal stack. May give you a head start.

Best,

Albert

> On Jul 1, 2015, at 3:08 AM, damien.schnebelen <[hidden email]> wrote:
>
> Hi everybody,
>
> After the analysis of 2D datasets of images by sripting in Fiji (Python), I
> want to pass to a 3D representation. To do so, I plan to use the 3D viewer
> plugin or the volume plugin. Nonetheless, the final aim being segmentating
> the datasets using spheres in 3D, I want to know if such functions are
> available in those plugins or in other ones.
> If it is the case, may somebody give me the procedures to obtain this result
> ?
>
> Thanks by advance,
> Damien, student.
>
>
>
> --
> View this message in context: http://imagej.1557.x6.nabble.com/3D-Segmentation-Using-Spheres-tp5013375.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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[damien.schnebelen]

Thank you very much, I will first look at your work so.

[damien.schnebelen]

Thank you very much, I will first look at your work so.