3D Viewer dependencies on OS X

[John Hayes]

Hi all,

I was wondering if someone knows the Java3D-related dependencies on OS X El Capitan for the 3D Viewer (http://3dviewer.neurofly.de/). I’m a bit confused which .jars are required and what version of Jogl it needs because I believe the newest Jogl made some API changes that are incompatible with the 3D Viewer code I saw.

My version of java is 1.8.0_92.

Thanks,
John
--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ctrueden]

Hi John,

> I was wondering if someone knows the Java3D-related dependencies on OS
> X El Capitan for the 3D Viewer

In general, the 3D Viewer dependencies are outlined in its POM:
    https://github.com/fiji/3D_Viewer/blob/3D_Viewer-4.0.1/pom.xml#L127-L159

I assume you are trying to use the new SciJava fork of Java 3D 1.6.0, which
ships on the Java-8 update site? If so, the artifacts are:

org.scijava:j3dcore:1.6.0-scijava-2
http://maven.imagej.net/#nexus-search;gav~org.scijava~j3dcore~1.6.0-scijava-2~~
https://github.com/scijava/java3d-core

org.scijava:j3dutils:1.6.0-scijava-2
http://maven.imagej.net/#nexus-search;gav~org.scijava~j3dutils~1.6.0-scijava-2~~
https://github.com/scijava/java3d-utils

org.scijava:vecmath:1.6.0-scijava-2
http://maven.imagej.net/#nexus-search;gav~org.scijava~vecmath~1.6.0-scijava-2~~
https://github.com/scijava/vecmath

Check the POMs for the dependencies.

> I’m a bit confused which .jars are required and what version of Jogl
> it needs because I believe the newest Jogl made some API changes that
> are incompatible with the 3D Viewer code I saw.

The code in the linked GitHub repository above depends on JOGL 2.3.2, which
AFAIK is still the newest release.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Mon, Oct 31, 2016 at 4:14 PM, John Hayes <[hidden email]> wrote:

> Hi all,
>
> I was wondering if someone knows the Java3D-related dependencies on OS X
> El Capitan for the 3D Viewer (http://3dviewer.neurofly.de/). I’m a bit
> confused which .jars are required and what version of Jogl it needs because
> I believe the newest Jogl made some API changes that are incompatible with
> the 3D Viewer code I saw.
>
> My version of java is 1.8.0_92.
>
> Thanks,
> John
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[John Hayes]

Hi Curtis,

Thanks for the response! One key point of confusion for me might be, is this the same (or perhaps newest) version of the 3D Viewer on the neurofly website I linked to? This is certainly the Fiji one it seems (which is the one I wanted), so maybe I’m using the wrong 3D Viewer jar.

Thanks again,
John

> On Nov 1, 2016, at 9:24 PM, Curtis Rueden <[hidden email]> wrote:
>
> Hi John,
>
>> I was wondering if someone knows the Java3D-related dependencies on OS
>> X El Capitan for the 3D Viewer
>
> In general, the 3D Viewer dependencies are outlined in its POM:
>    https://github.com/fiji/3D_Viewer/blob/3D_Viewer-4.0.1/pom.xml#L127-L159
>
> I assume you are trying to use the new SciJava fork of Java 3D 1.6.0, which
> ships on the Java-8 update site? If so, the artifacts are:
>
> org.scijava:j3dcore:1.6.0-scijava-2
> http://maven.imagej.net/#nexus-search;gav~org.scijava~j3dcore~1.6.0-scijava-2~~
> https://github.com/scijava/java3d-core
>
> org.scijava:j3dutils:1.6.0-scijava-2
> http://maven.imagej.net/#nexus-search;gav~org.scijava~j3dutils~1.6.0-scijava-2~~
> https://github.com/scijava/java3d-utils
>
> org.scijava:vecmath:1.6.0-scijava-2
> http://maven.imagej.net/#nexus-search;gav~org.scijava~vecmath~1.6.0-scijava-2~~
> https://github.com/scijava/vecmath
>
> Check the POMs for the dependencies.
>
>> I’m a bit confused which .jars are required and what version of Jogl
>> it needs because I believe the newest Jogl made some API changes that
>> are incompatible with the 3D Viewer code I saw.
>
> The code in the linked GitHub repository above depends on JOGL 2.3.2, which
> AFAIK is still the newest release.
>
> Regards,
> Curtis
>
> --
> Curtis Rueden
> LOCI software architect - http://loci.wisc.edu/software
> ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> Did you know ImageJ has a forum? http://forum.imagej.net/
>
>
> On Mon, Oct 31, 2016 at 4:14 PM, John Hayes <[hidden email]> wrote:
>
>> Hi all,
>>
>> I was wondering if someone knows the Java3D-related dependencies on OS X
>> El Capitan for the 3D Viewer (http://3dviewer.neurofly.de/). I’m a bit
>> confused which .jars are required and what version of Jogl it needs because
>> I believe the newest Jogl made some API changes that are incompatible with
>> the 3D Viewer code I saw.
>>
>> My version of java is 1.8.0_92.
>>
>> Thanks,
>> John
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ctrueden]

Hi John,

Sorry for dropping the ball on this thread till now.

> One key point of confusion for me might be, is this the same (or
> perhaps newest) version of the 3D Viewer on the neurofly website I
> linked to?

The neurofly website is the site of the original 3D Viewer author Bene
Schmid, who no longer maintains or supports it.

I have been wanting to migrate the content from there to the ImageJ wiki
page https://imagej.net/3D_Viewer, but have not had the time.

The latest version of the 3D Viewer source which ships with Fiji is
https://github.com/fiji/3D_Viewer.

I do not know which version of 3D Viewer ships with plain ImageJ 1.x, but I
presume an older one.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Wed, Nov 2, 2016 at 3:44 PM, John Hayes <[hidden email]> wrote:

> Hi Curtis,
>
> Thanks for the response! One key point of confusion for me might be, is
> this the same (or perhaps newest) version of the 3D Viewer on the neurofly
> website I linked to? This is certainly the Fiji one it seems (which is the
> one I wanted), so maybe I’m using the wrong 3D Viewer jar.
>
> Thanks again,
> John
>
> > On Nov 1, 2016, at 9:24 PM, Curtis Rueden <[hidden email]> wrote:
> >
> > Hi John,
> >
> >> I was wondering if someone knows the Java3D-related dependencies on OS
> >> X El Capitan for the 3D Viewer
> >
> > In general, the 3D Viewer dependencies are outlined in its POM:
> >    https://github.com/fiji/3D_Viewer/blob/3D_Viewer-4.0.1/
> pom.xml#L127-L159
> >
> > I assume you are trying to use the new SciJava fork of Java 3D 1.6.0,
> which
> > ships on the Java-8 update site? If so, the artifacts are:
> >
> > org.scijava:j3dcore:1.6.0-scijava-2
> > http://maven.imagej.net/#nexus-search;gav~org.scijava~
> j3dcore~1.6.0-scijava-2~~
> > https://github.com/scijava/java3d-core
> >
> > org.scijava:j3dutils:1.6.0-scijava-2
> > http://maven.imagej.net/#nexus-search;gav~org.scijava~
> j3dutils~1.6.0-scijava-2~~
> > https://github.com/scijava/java3d-utils
> >
> > org.scijava:vecmath:1.6.0-scijava-2
> > http://maven.imagej.net/#nexus-search;gav~org.scijava~
> vecmath~1.6.0-scijava-2~~
> > https://github.com/scijava/vecmath
> >
> > Check the POMs for the dependencies.
> >
> >> I’m a bit confused which .jars are required and what version of Jogl
> >> it needs because I believe the newest Jogl made some API changes that
> >> are incompatible with the 3D Viewer code I saw.
> >
> > The code in the linked GitHub repository above depends on JOGL 2.3.2,
> which
> > AFAIK is still the newest release.
> >
> > Regards,
> > Curtis
> >
> > --
> > Curtis Rueden
> > LOCI software architect - http://loci.wisc.edu/software
> > ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
> > Did you know ImageJ has a forum? http://forum.imagej.net/
> >
> >
> > On Mon, Oct 31, 2016 at 4:14 PM, John Hayes <[hidden email]> wrote:
> >
> >> Hi all,
> >>
> >> I was wondering if someone knows the Java3D-related dependencies on OS X
> >> El Capitan for the 3D Viewer (http://3dviewer.neurofly.de/). I’m a bit
> >> confused which .jars are required and what version of Jogl it needs
> because
> >> I believe the newest Jogl made some API changes that are incompatible
> with
> >> the 3D Viewer code I saw.
> >>
> >> My version of java is 1.8.0_92.
> >>
> >> Thanks,
> >> John
> >> --
> >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >>
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html