3D binary Reconstruct

[Eric BADEL-2]

Hi,
I have a binary stack I need to clean (remove smallest particles). I
simply apply a binary erosion then I would like to apply a
binaryreconstruct. I use the G. Landini's Morphology tools but the
binaryreconstruction does not work on stack.
Any other suggestions ?
Thank you
Eric

--
******  [hidden email]  ***********
BADEL Eric
PIAF
INRA Site de Crouel
234, avenue du Brezet
63100 Clermont-Ferrand - France
tel: [phone]

[hidden email]
************************************************

[Gabriel Landini]

On Monday 31 May 2010, you wrote:
> I have a binary stack I need to clean (remove smallest particles). I
> simply apply a binary erosion then I would like to apply a
> binaryreconstruct. I use the G. Landini's Morphology tools but the
> binaryreconstruction does not work on stack.

What version are you using?
The latest one (1.6) does stacks, not sure since when (perhaps 1.3)?
Get the latest one from here:
http://www.dentistry.bham.ac.uk/landinig/software/morphology.zip

Cheers

Gabriel

[Michael Doube]

Eric,

Try Purify in BoneJ, which does exactly what you wish for.  It's
multithreaded or if your stacks are huge and you have lots of RAM, you
can run in it linear (O(n)) time.

http://bonej.org/purify

Michael

On 31/05/10 10:37, Eric Badel wrote:
> Hi,
> I have a binary stack I need to clean (remove smallest particles). I
> simply apply a binary erosion then I would like to apply a
> binaryreconstruct. I use the G. Landini's Morphology tools but the
> binaryreconstruction does not work on stack.
> Any other suggestions ?
> Thank you
> Eric
>