Dear all,
I sincerely apologize to not ask a direct ImageJ question and this even if
at the end it is very probable that I will write an ImageJ macro in order to
make the needed job.
So I have a pdb (Protein Data Bank -
http://www.pdb.org/) file corresponding
to the protein we are working on in our group.
In one of the mutant of the protein we are working on, 2 amino-acids
neighboring a given one have been deleted and I would need a pdb file
corresponding to this mutant.
To be more precise, the pdb file has aa numbered from 907 to 1047 and I
erased the aa 943 and 945 from it.
But now the aa 942 and 944 on one side and 944 and 946 on the other side are
placed at positions, or if you prefer distances, that are not compatible
anymore for having covalent bonds between them.
Thus I need to apply some 3D translation and rotation transformations in
order to generate a file where these distances would again be compatible
with covalent bonds before plugin this file within an MD software for
minimizing its energy.
Thus would somebody of you have an idea, suggestion, software
recommendation,
for making such a job?
I thank you very much in advance for your help and wish you a nice week-end.
My best regards,
Philippe
Philippe CARL
Laboratoire de Biophotonique et Pharmacologie
UMR 7213 CNRS - Université de Strasbourg
Faculté de Pharmacie
74 route du Rhin
67401 ILLKIRCH
Tel : +33(0)3 68 85 41 84
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