Adjustable Watershed in Fiji

[Greg]

Hi,

I want to install this plugin here:

http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:adjustable_watershed:start

as I need an adjustable watershed algorithm. I experience exactly the same Problems as described in this bug-thread here:

http://fiji.sc/bugzilla/show_bug.cgi?id=1012

So it is right now not possible to install .java plugins into Fiji/Imagej2 ?!
Anyone knows a way how to install the Adjustable_Watershed plugin from Michael Schmid in Fiji right now ?

Greets,
Greg

[ctrueden]

Hi Greg,

> Anyone knows a way how to install the Adjustable_Watershed plugin from
> Michael Schmid in Fiji right now ?

I posted a compiled version of the plugin here:
    http://curtis.imagej.net/2015-05-19-adjustable-watershed/

I created it using the javac command:
    javac -cp /Applications/Fiji.app/jars/ij-1.49s.jar
Adjustable_Watershed.java

Drop the .class file into your Fiji.app/plugins folder, and it will appear
in the Plugins menu.

Regards,
Curtis

On Tue, May 19, 2015 at 8:28 AM, Greg <[hidden email]> wrote:

> Hi,
>
> I want to install this plugin here:
>
>
> http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:adjustable_watershed:start
>
> as I need an adjustable watershed algorithm. I experience exactly the same
> Problems as described in this bug-thread here:
>
> http://fiji.sc/bugzilla/show_bug.cgi?id=1012
>
> So it is right now not possible to install .java plugins into Fiji/Imagej2
> ?!
> Anyone knows a way how to install the Adjustable_Watershed plugin from
> Michael Schmid in Fiji right now ?
>
> Greets,
> Greg
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Adjustable-Watershed-in-Fiji-tp5012868.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Michael Schmid]

Hi Greg, Curtis,

now I have added a .class file to the webpage of the plugin
  http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:adjustable_watershed:start

It was compiled with plain ImageJ; does it work with Fiji? Don't forget that it needs uppercase first characters; by default it will be all-lowercase when downloaded.

If it works like this with Fiji (I am still using plain ImageJ) I could add class files also for other plugins.

Michael
________________________________________________________________
On May 19, 2015, at 16:18, Curtis Rueden wrote:

> Hi Greg,
>
>> Anyone knows a way how to install the Adjustable_Watershed plugin from
>> Michael Schmid in Fiji right now ?
>
> I posted a compiled version of the plugin here:
>    http://curtis.imagej.net/2015-05-19-adjustable-watershed/
>
> I created it using the javac command:
>    javac -cp /Applications/Fiji.app/jars/ij-1.49s.jar
> Adjustable_Watershed.java
>
> Drop the .class file into your Fiji.app/plugins folder, and it will appear
> in the Plugins menu.
>
> Regards,
> Curtis
>
> On Tue, May 19, 2015 at 8:28 AM, Greg <[hidden email]> wrote:
>
>> Hi,
>>
>> I want to install this plugin here:
>>
>>
>> http://imagejdocu.tudor.lu/doku.php?id=plugin:segmentation:adjustable_watershed:start
>>
>> as I need an adjustable watershed algorithm. I experience exactly the same
>> Problems as described in this bug-thread here:
>>
>> http://fiji.sc/bugzilla/show_bug.cgi?id=1012
>>
>> So it is right now not possible to install .java plugins into Fiji/Imagej2
>> ?!
>> Anyone knows a way how to install the Adjustable_Watershed plugin from
>> Michael Schmid in Fiji right now ?
>>
>> Greets,
>> Greg
>>
>>
>>
>> --
>> View this message in context:
>> http://imagej.1557.x6.nabble.com/Adjustable-Watershed-in-Fiji-tp5012868.html
>> Sent from the ImageJ mailing list archive at Nabble.com.
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Greg]

Hi Michael and Curtis,

thx for your quick replies. So I tested the .class file from the plugin webpage, and it works in Fiji !

Thanks again and Greets,
Greg