Automatically aligning fiducial marks

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Automatically aligning fiducial marks

gbarash
Hello!
I am new to ImageJ and have a question: I need to write a java program that utilizes ImageJ API to automatically align two images using fiducial marks that exist on the images. Can anyone point me in a direction on how to do that? I have looked through the API's but have not seen anything that does something like that.
Many thanks!

Gil.