Batch conversion to RGB stacks

[Vedran Radojcic]

New to ImageJ and unable to find answer to this question. Is there a way to batch change multiple images to RGB stacks for subsequent analysis? I am trying to quantitate areas of fibrosis on Masson trichrome stained tissue (as described here https://www.youtube.com/watch?v=M8Eqq_nn4as) and when dealing with dozens to hundreds of samples, it really becomes a major challenge. Appreciate advice.

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ctrueden]

Hi Vedran,

> Is there a way to batch change multiple images to RGB stacks for
> subsequent analysis?

Have you looked over the batch processing guide?
    https://imagej.net/Batch

Happy to answer questions and improve the docs [1] if anything is unclear.

Regards,
Curtis

[1] Actually, the whole ImageJ web site at https://imagej.net/ is a wiki,
so _you_ can also help improve the docs! :-)

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Curtis Rueden
LOCI software architect - https://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - https://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Thu, Jun 1, 2017 at 5:18 PM, Vedran Radojcic <
[hidden email]> wrote:

> New to ImageJ and unable to find answer to this question. Is there a way
> to batch change multiple images to RGB stacks for subsequent analysis? I am
> trying to quantitate areas of fibrosis on Masson trichrome stained tissue
> (as described here https://www.youtube.com/watch?v=M8Eqq_nn4as) and when
> dealing with dozens to hundreds of samples, it really becomes a major
> challenge. Appreciate advice.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html