Hi Rabih
There is a good example by Albert Cardona that shows how to use roi
managers in jython scripts.
http://fiji.sc/Jython_Scripting#..._and_counting_particles.2C_and_measuring_their_areasFollowing that example I've been able to write Jython scripts which use two
or more ROI Managers. The only catch is that they are hidden ROI
managers. (passing True to the roiManager constructor makes it a hidden
roiManager
http://rsb.info.nih.gov/ij/developer/api/ij/plugin/frame/RoiManager.html#constructor.summary)
Attached is a simple script that sets up two different roiManagers. The
only problem is that if I show the second roiManager it doesn't seem to
work.
Maybe it is not possible to show two roi managers or maybe I am doing
something wrong... I didn't look into it closely because for the app I was
working on I didn't need to show the roiManagers.
Brian
On Mon, Mar 30, 2015 at 10:31 AM, Cammer, Michael <
[hidden email]> wrote:
> I don't think so. We simply have a series of ROI files with different
> names that the macros open and close as needed. When we need two open at
> one, we concatenate them and use an index offset for the second set of ROIs.
>
> =========================================================================
> Michael Cammer, Microscopy Core & Skirball Institute, NYU Langone Medical
> Center
> Cell: 914-309-3270 Temporary location:
> SK2-7
>
http://ocs.med.nyu.edu/microscopy &
http://microscopynotes.com/>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:
[hidden email]] On Behalf Of
> rabih assaf
> Sent: Monday, March 30, 2015 9:25 AM
> To:
[hidden email]
> Subject: Batch processing
>
> Hello,
> Is there a way to open many ROI manager at the same time using a macro?
> Thanks in advance.
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