CANDLE-J

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CANDLE-J

Daniel White
Hi Haider,

this looks really nice!
The aim now couldbe to get as many folks to use it and cite it as possible:


I see there is some native code witten in C
in the source code?
But other parts in java.
Why not make it pure java/imageJ1/2

The C code is doing things like mean filters which you can just reuse from
ImageJ

Then it will compile on any JDK, and will also work on windows.... (I use
all linux, OSX and windows)

Then you can add it to your very own ImageJ2 update site so folks can
easily get it, install it and use it, and then cite you hundreds of
times... which is what you really want.


http://imagej.net/How_to_set_up_and_populate_an_update_site


cheers

Dan




HAIDER Riaz <haiderriazkhan@...> writes:

>
> Hello everyone
> The Collaborative Approach for eNhanced Denoising under Low-light
excitation (CANDLE) is now available
> as an ImageJ plugin called CANDLE-J. CANDLE-J is instituted for the
processing of 3D multi-photon
> microscopy images and is very adept for low signal to noise ratio
typically encountered when imaging deep
> in scattered biological specimens.
> Here is the link to the github repo that has installation instructions +
information on usage:
> https://github.com/haiderriazkhan/CANDLE-J
> Also, here is the link to the CANDLE paper in Medical Image Analysis
demonstrating its capabilities:
http://www.bic.mni.mcgill.ca/uploads/ServicesSoftwareAdvancedImageProcessingTools/candle.pdf
> Thank you and I hope people find this useful.
> Haider Riaz Khan
McGill UniversityMontreal, Quebec
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
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Re: CANDLE-J

haider
Hi Daniel

I have just updated the Github repo where I have now released a binary for Windows alongside Mac OS X and Linux(https://github.com/haiderriazkhan/CANDLE-J). So portability is less of an issue. But that said, someone has expressed interest in trying to  rewrite the C routines and make CANDLE-J a purely Java software. So a pure Java version may very well be released in the future.  

Best
Haider Khan