Colocalisation threshold plugin - results table messed up

[Daniel James White]

Dear imageJ folks, and specifically Wayne R and Tony C,

i've been testing with the Colocalisation Thershold plugin,
that's bundled as part of the MacBioPhotonics imageJ bundle.

i am running it on MacOSX 10.4.10
imageJ 1.38x with plugin bundle downloaded today.

With default options to show all of the possible results,
the results table is messed up so the numbers are not in the right  
columns,
so not under the right column headings.

just a small bug, but confusing still.

cheers

Dan



Dr. Daniel James White BSc. (Hons.) PhD
Senior Microscopist / Image Processing and Analysis
Light Microscopy Facility
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
01307 DRESDEN
Germany

[phone] (German Mobile)
+49  (0) 351 210 2627 (Work phone at MPI-CBG)
+49  (0) 351 210 1078 (Fax MPI-CBG LMF)
[phone] (Finnish mobile, only when I'm in Finland)
http://www.bioimagexd.net
http://www.chalkie.org.uk
[hidden email]
( [hidden email] )

[Tony Collins-4]

Hi Dan,

Oops. I had it adding the filename twice to the results string if you
had select 'include zero-zero pixels' selected.

Let me know if this works better:
http://www.macbiophotonics.ca/downloads/Colocalisation_Threshold.java 

Cheers.

Tony

Tony J. Collins, Ph.D.
McMaster Biophotonics Facility
Dept. Biochemistry and Biomedical Sciences HSC 4H21A
McMaster University, Hamilton, ON, L8N 3Z5
[phone] x28812(off.)/x26488(lab)
[hidden email]     www.macbiophotonics.ca


> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Dan

> White
> Sent: July 10, 2007 11:16 AM
> To: [hidden email]
> Subject: Colocalisation threshold plugin - results table messed up
>
> Dear imageJ folks, and specifically Wayne R and Tony C,
>
> i've been testing with the Colocalisation Thershold plugin,
> that's bundled as part of the MacBioPhotonics imageJ bundle.
>
> i am running it on MacOSX 10.4.10
> imageJ 1.38x with plugin bundle downloaded today.
>
> With default options to show all of the possible results,
> the results table is messed up so the numbers are not in the right
> columns,
> so not under the right column headings.
>
> just a small bug, but confusing still.
>
> cheers
>
> Dan
>
>
>
> Dr. Daniel James White BSc. (Hons.) PhD
> Senior Microscopist / Image Processing and Analysis
> Light Microscopy Facility
> Max Planck Institute of Molecular Cell Biology and Genetics
> Pfotenhauerstrasse 108
> 01307 DRESDEN
> Germany
>
> [phone] (German Mobile)
> +49  (0) 351 210 2627 (Work phone at MPI-CBG)
> +49  (0) 351 210 1078 (Fax MPI-CBG LMF)
> [phone] (Finnish mobile, only when I'm in Finland)
> http://www.bioimagexd.net
> http://www.chalkie.org.uk
> [hidden email]
> ( [hidden email] )

[Liu, Dongfang (NIH/NIAID) [F]]

Dear all,

When I open a *.avi image in Image J. Image J come out error message" only open 402 Frames, Image J out of memeory". ---I increased the memory of Image J from 1000M to 1600M. ---- I restarted the Image J. ---- I cannot run the Image J. ---- I uninstalled the Image J and reinstalled the imagej. ----Run it---The error window "Could not create the Java virtual Machine".

Could you fix it? Thank you very much!

Best regards
Dongfang

[Wayne Rasband]

If you are using Windows, delete the ImageJ.cfg file in the ImageJ  
folder and restart ImageJ. This resets the memory limit to 2/3 of  
available RAM, but not more than 640MB.

-wayne


On Jul 10, 2007, at 8:08 PM, Liu, Dongfang (NIH/NIAID) [F] wrote:

> Dear all,
>
> When I open a *.avi image in Image J. Image J come out error  
> message" only open 402 Frames, Image J out of memeory". ---I  
> increased the memory of Image J from 1000M to 1600M. ---- I  
> restarted the Image J. ---- I cannot run the Image J. ---- I  
> uninstalled the Image J and reinstalled the imagej. ----Run it---
> The error window "Could not create the Java virtual Machine".
>
> Could you fix it? Thank you very much!
>
> Best regards
> Dongfang

[Lambright, Geoffrey]

Thanks Wayne and Dongfang,

I had the same problem, and I am now limited to 640MB. I would like
utilize 2/3 of my two gigs of RAM, however, when I go above 640MB I have
the same Java Virtual Machine error. Why the 640 limit, and is there a
way around that? I have used more on other windows machines, but I don't
know where the difference was. Does anybody know? Thanks!!!

Geoffrey

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Rasband Wayne
Sent: Tuesday, July 10, 2007 6:31 PM
To: [hidden email]
Subject: Re: out of memory Image J

If you are using Windows, delete the ImageJ.cfg file in the ImageJ  
folder and restart ImageJ. This resets the memory limit to 2/3 of  
available RAM, but not more than 640MB.

-wayne


On Jul 10, 2007, at 8:08 PM, Liu, Dongfang (NIH/NIAID) [F] wrote:

> Dear all,
>
> When I open a *.avi image in Image J. Image J come out error  
> message" only open 402 Frames, Image J out of memeory". ---I  
> increased the memory of Image J from 1000M to 1600M. ---- I  
> restarted the Image J. ---- I cannot run the Image J. ---- I  
> uninstalled the Image J and reinstalled the imagej. ----Run it---
> The error window "Could not create the Java virtual Machine".
>
> Could you fix it? Thank you very much!
>
> Best regards
> Dongfang