Color objects with specific area/diameter

[marcosfelipeti]

Hi everyone!

I am trying to find a way to color some objects in my images which have a specific area/diameter. Thus, I need to identify the objects in the original image and the colored one. Could somebody help me out?

Thanks!

[Jacqueline Ross]

Hi Marcos,

I'm sure we'd love to help if we can. How about posting an image somewhere so that we can see what you are talking about?

I imagine that you might have to use the particle analyser to get the particle distribution first and then use that information to select the ROIs that meet your criteria and fill them with the colour you want.

Kind regards,

Jacqui

Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit 
School of Medical Sciences 
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND

Tel: [phone]
Fax: [phone]

http://www.fmhs.auckland.ac.nz/sms/biru/


-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of marcosfelipeti
Sent: Tuesday, 14 October 2014 12:57 p.m.
To: [hidden email]
Subject: Color objects with specific area/diameter

Hi everyone!

I am trying to find a way to color some objects in my images which have a specific area/diameter. Thus, I need to identify the objects in the original image and the colored one. Could somebody help me out?

Thanks!



-----
Marcos Felipe Martins Silva
Krasnow Institute for Advanced Study, GMU
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Sent from the ImageJ mailing list archive at Nabble.com.

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[Thomas Boudier]

Hi,

have a look to this macro :

http://imagejdocu.tudor.lu/doku.php?id=macro:roi_color_coder

and this site : http://fiji.sc/BAR

Best

Thomas


On 14/10/14 07:56, marcosfelipeti wrote:

> Hi everyone!
>
> I am trying to find a way to color some objects in my images which have a
> specific area/diameter. Thus, I need to identify the objects in the original
> image and the colored one. Could somebody help me out?
>
> Thanks!
>
>
>
> -----
> Marcos Felipe Martins Silva
> Krasnow Institute for Advanced Study, GMU
> --
> View this message in context: http://imagej.1557.x6.nabble.com/Color-objects-with-specific-area-diameter-tp5010017.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
   /***************************************************************/
      Thomas Boudier, Associate Professor, UPMC,
      Université Pierre et Marie Curie, Paris, France.
      BioInformatics Institute (BII)/IPAL, Singapore.
/**************************************************************/

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Jacqueline Ross]

Very nice Thomas!

I didn't realise this was available.

Kind regards,

Jacqui

Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit 
School of Medical Sciences 
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND

Tel: [phone]
Fax: [phone]

http://www.fmhs.auckland.ac.nz/sms/biru/


-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Thomas Boudier
Sent: Tuesday, 14 October 2014 4:23 p.m.
To: [hidden email]
Subject: Re: Color objects with specific area/diameter

Hi,

have a look to this macro :

http://imagejdocu.tudor.lu/doku.php?id=macro:roi_color_coder

and this site : http://fiji.sc/BAR

Best

Thomas


On 14/10/14 07:56, marcosfelipeti wrote:

> Hi everyone!
>
> I am trying to find a way to color some objects in my images which
> have a specific area/diameter. Thus, I need to identify the objects in
> the original image and the colored one. Could somebody help me out?
>
> Thanks!
>
>
>
> -----
> Marcos Felipe Martins Silva
> Krasnow Institute for Advanced Study, GMU
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Color-objects-with-specific-area-diam
> eter-tp5010017.html Sent from the ImageJ mailing list archive at
> Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
   /***************************************************************/
      Thomas Boudier, Associate Professor, UPMC,
      Université Pierre et Marie Curie, Paris, France.
      BioInformatics Institute (BII)/IPAL, Singapore.
/**************************************************************/

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[marcosfelipeti]

Hey Thanks for the quick answer!

I already looked up the ROI Color Coder and it just colored the perimeter. Moreover it colors every single object. What I am trying to do basically is:

color the object with the area equals 2 with the red color
color the object with the area equals 5 with the blue color
...
And so on...

[marcosfelipeti]

Perhaps I could email you with the image so you can analyse it.
Thanks for the availability!