Compiler Errors with "ColorComparison_.java" Plugin
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Can anyone assist?I downloaded the plugin, ColorComparison_.java, from the NIH Image J website to quantify data for a manuscript and was unable to use it. I receive error messages from Image J's compiler. I have Image J 1.42q and put the file (ColorComparison_.java) in the Plugins folder. I also tried putting it in the Analyze folder. The error messages are:C:\Program Files\ImageJ\plugins\ImageProcessor.java:8: cannot find symbolsymbol : class Binnerlocation: package ij.pluginimport ij.plugin.Binner; ^C:\Program Files\ImageJ\plugins\ImageProcessor.java:9: cannot find symbolsymbol : class Methodlocation: class ij.process.AutoThresholderimport ij.process.AutoThresholder.Method; ^C:\Program Files\ImageJ\plugins\ImageProcessor.java:12: cannot find symbolsymbol : class Overlaylocation: package ij.guiimport ij.gui.Overlay; ^C:\Program Files\ImageJ\plugins\ColorComparison_.java:78: cannot access ImageProcessorbad source file: C:\Program Files\ImageJ\plugins\ImageProcessor.javafile does not contain class ImageProcessorPlease remove or make sure it appears in the correct subdirectory of the sourcepath. protected ImageProcessor ip1, ip2, ipPolar; ^Can anyone tell me what I need to do to get the plugin up and running? I'd appreciate any tips.
Also, I had a similar problem when I downloaded the "Image Processor.java" plugin. I'm posting a separate email for that. Thanks so much for your time. A. Hicks, Ph.D. -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: Compiler Errors with "ColorComparison_.java" Plugin
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Hi Addie,
I downloaded ColorComparison_.java to my plugins folder and was able to pass it through the ImageJ Compile and Run command with no problems. Maybe you can describe the steps you took. I am also wondering if your downloading of an ImageProcessor.java in the plugins folder is interfering. ImageJ has its own ImageProcessor.java class that might be getting hidden by your placement of ImageProcessor.java in the plugins folder. For now delete that file and see if Compile and Run will work with the ColorComparison_.java plugin. On Wed, Aug 7, 2013 at 3:49 PM, Addie H <[hidden email]> wrote: > Can anyone assist?I downloaded the plugin, ColorComparison_.java, from the > NIH Image J website to quantify data for a manuscript and was unable to use > it. I receive error messages from Image J's compiler. I have Image J > 1.42q and put the file (ColorComparison_.java) in the Plugins folder. I > also tried putting it in the Analyze folder. The error messages > are:C:\Program Files\ImageJ\plugins\ImageProcessor.java:8: cannot find > symbolsymbol : class Binnerlocation: package ij.pluginimport > ij.plugin.Binner; ^C:\Program > Files\ImageJ\plugins\ImageProcessor.java:9: cannot find symbolsymbol : > class Methodlocation: class ij.process.AutoThresholderimport > ij.process.AutoThresholder.Method; > ^C:\Program Files\ImageJ\plugins\ImageProcessor.java:12: cannot find > symbolsymbol : class Overlaylocation: package ij.guiimport ij.gui.Overlay; > ^C:\Program Files\ImageJ\plugins\ColorComparison_.java:78: > cannot access ImageProcessorbad source file: C:\Program > Files\ImageJ\plugins\ImageProcessor.javafile does not contain class > ImageProcessorPlease remove or make sure it appears in the correct > subdirectory of the sourcepath. protected ImageProcessor ip1, ip2, > ipPolar; ^Can anyone tell me what I need to do to get the plugin > up and running? I'd appreciate any tips. > Also, I had a similar problem when I downloaded the "Image Processor.java" > plugin. I'm posting a separate email for that. > > Thanks so much for your time. > > A. Hicks, Ph.D. > > > > > > > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Barry. You are right about the ImageProcessor.java program. I did take that out earlier today. I was up all night last night searching for appropriate plugins to do fluorescence intensity measurements and somehow mistook that program for a plugin. Someone stated that it was part of the core Image J software and not a plug in.
Also, I have the 1.42q version of Image J and someone said that ColorComparison_.java works just fine with version 1.48. Maybe that's the version you have. I will update to the latest version tomorrow and try again. Hopefully it will be fine. If not, I may touch bases with you again... Thanks so much. I appreciate the help. Addie > Date: Wed, 7 Aug 2013 22:16:28 -0500 > From: [hidden email] > Subject: Re: Compiler Errors with "ColorComparison_.java" Plugin > To: [hidden email] > > Hi Addie, > > I downloaded ColorComparison_.java to my plugins folder and was able to > pass it through the ImageJ Compile and Run command with no problems. Maybe > you can describe the steps you took. > > I am also wondering if your downloading of an ImageProcessor.java in the > plugins folder is interfering. ImageJ has its own ImageProcessor.java class > that might be getting hidden by your placement of ImageProcessor.java in > the plugins folder. For now delete that file and see if Compile and Run > will work with the ColorComparison_.java plugin. > > > On Wed, Aug 7, 2013 at 3:49 PM, Addie H <[hidden email]> wrote: > > > Can anyone assist?I downloaded the plugin, ColorComparison_.java, from the > > NIH Image J website to quantify data for a manuscript and was unable to use > > it. I receive error messages from Image J's compiler. I have Image J > > 1.42q and put the file (ColorComparison_.java) in the Plugins folder. I > > also tried putting it in the Analyze folder. The error messages > > are:C:\Program Files\ImageJ\plugins\ImageProcessor.java:8: cannot find > > symbolsymbol : class Binnerlocation: package ij.pluginimport > > ij.plugin.Binner; ^C:\Program > > Files\ImageJ\plugins\ImageProcessor.java:9: cannot find symbolsymbol : > > class Methodlocation: class ij.process.AutoThresholderimport > > ij.process.AutoThresholder.Method; > > ^C:\Program Files\ImageJ\plugins\ImageProcessor.java:12: cannot find > > symbolsymbol : class Overlaylocation: package ij.guiimport ij.gui.Overlay; > > ^C:\Program Files\ImageJ\plugins\ColorComparison_.java:78: > > cannot access ImageProcessorbad source file: C:\Program > > Files\ImageJ\plugins\ImageProcessor.javafile does not contain class > > ImageProcessorPlease remove or make sure it appears in the correct > > subdirectory of the sourcepath. protected ImageProcessor ip1, ip2, > > ipPolar; ^Can anyone tell me what I need to do to get the plugin > > up and running? I'd appreciate any tips. > > Also, I had a similar problem when I downloaded the "Image Processor.java" > > plugin. I'm posting a separate email for that. > > > > Thanks so much for your time. > > > > A. Hicks, Ph.D. > > > > > > > > > > > > > > > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Addie,
> I was up all night last night searching for appropriate plugins to do > fluorescence intensity measurements Did you check out the Fiji distribution of ImageJ? http://fiji.sc/ http://fiji.sc/Category:Plugins http://fiji.sc/Segmentation It targets life sciences, especially microscopy. Regards, Curtis On Wed, Aug 7, 2013 at 11:01 PM, Addie H <[hidden email]> wrote: > Hi Barry. You are right about the ImageProcessor.java program. I did > take that out earlier today. I was up all night last night searching for > appropriate plugins to do fluorescence intensity measurements and somehow > mistook that program for a plugin. Someone stated that it was part of the > core Image J software and not a plug in. > Also, I have the 1.42q version of Image J and someone said that > ColorComparison_.java works just fine with version 1.48. Maybe that's the > version you have. I will update to the latest version tomorrow and try > again. Hopefully it will be fine. If not, I may touch bases with you > again... > Thanks so much. I appreciate the help. > Addie > > > Date: Wed, 7 Aug 2013 22:16:28 -0500 > > From: [hidden email] > > Subject: Re: Compiler Errors with "ColorComparison_.java" Plugin > > To: [hidden email] > > > > Hi Addie, > > > > I downloaded ColorComparison_.java to my plugins folder and was able to > > pass it through the ImageJ Compile and Run command with no problems. > Maybe > > you can describe the steps you took. > > > > I am also wondering if your downloading of an ImageProcessor.java in the > > plugins folder is interfering. ImageJ has its own ImageProcessor.java > class > > that might be getting hidden by your placement of ImageProcessor.java in > > the plugins folder. For now delete that file and see if Compile and Run > > will work with the ColorComparison_.java plugin. > > > > > > On Wed, Aug 7, 2013 at 3:49 PM, Addie H <[hidden email]> wrote: > > > > > Can anyone assist?I downloaded the plugin, ColorComparison_.java, from > the > > > NIH Image J website to quantify data for a manuscript and was unable > to use > > > it. I receive error messages from Image J's compiler. I have Image J > > > 1.42q and put the file (ColorComparison_.java) in the Plugins folder. > I > > > also tried putting it in the Analyze folder. The error messages > > > are:C:\Program Files\ImageJ\plugins\ImageProcessor.java:8: cannot find > > > symbolsymbol : class Binnerlocation: package ij.pluginimport > > > ij.plugin.Binner; ^C:\Program > > > Files\ImageJ\plugins\ImageProcessor.java:9: cannot find symbolsymbol : > > > class Methodlocation: class ij.process.AutoThresholderimport > > > ij.process.AutoThresholder.Method; > > > ^C:\Program Files\ImageJ\plugins\ImageProcessor.java:12: cannot find > > > symbolsymbol : class Overlaylocation: package ij.guiimport > ij.gui.Overlay; > > > ^C:\Program Files\ImageJ\plugins\ColorComparison_.java:78: > > > cannot access ImageProcessorbad source file: C:\Program > > > Files\ImageJ\plugins\ImageProcessor.javafile does not contain class > > > ImageProcessorPlease remove or make sure it appears in the correct > > > subdirectory of the sourcepath. protected ImageProcessor ip1, ip2, > > > ipPolar; ^Can anyone tell me what I need to do to get the > plugin > > > up and running? I'd appreciate any tips. > > > Also, I had a similar problem when I downloaded the "Image > Processor.java" > > > plugin. I'm posting a separate email for that. > > > > > > Thanks so much for your time. > > > > > > A. Hicks, Ph.D. > > > > > > > > > > > > > > > > > > > > > > > > > > > > > > -- > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > > -- > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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