Confocal stack stitching

[Daniel James White]

Hi s. pagakis,


On 16 Oct 2009, at 06:00, IMAGEJ automatic digest system <[hidden email]
 > wrote:

> Date:    Thu, 15 Oct 2009 12:55:30 +0300
> From:    "S. Pagakis" <[hidden email]>
> Subject: Re: PlateMontage macro for ImageJ website
>
> Hello
>
> I take this opportunity with Neils' posting to ask whether these is
> something similar which can operate on confocal stacks.
>
> In other words, a plugin or macro to tile together confocal stacks
> (of same dimensions) which have been acquired in a systematic way
> covering a large field of view.
>
> A nice option would also be to be able to specify overlap, between
> the neighboring stacks, along the edges.
>
> Regards

For 3d stitching of confocal z stack tiles you can use this
http://pacific.mpi-cbg.de/wiki/index.php/Stitching_2D/3D#Stitch_Directory_with_Images_.28unknown_configuration.29

Dowload fiji (is just ImageJ batteries included) from

http://pacific.mpi-cbg.de/

Update it,
And you will see the plugin in the plugins - stitching menu item.

Cheers

Dan

Daniel J. White Ph.D.
Max Planck Institute - CBG
Light Microscopy Facility
and Image Processing Facility.
Dresden, Germany.

Fiji is just ImageJ (batteries included)
http://pacific.mpi-cbg.de

BioImageXD
http://www.bioimagexd.net

http://www.chalkie.org.uk

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