DICOM Import/Export

[Alexandre Rainha Campos]

Hi

I'm a new user of ImageJ and I was trying to install the DICOM
import/export plugin but I must be doing something wrong.

I've expanded the dcmie to home folder and moved Dcm to plugins folder.
I've also expanded medianet to home folder.

After all this I still get an error message saying that there is a Plugin
or class not found.

Can someone please help me?

Thank you

Alexandre

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[Becksfort, Jared]

Have you restarted ImageJ yet?

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Alexandre Rainha Campos
Sent: Tuesday, April 30, 2013 1:24 PM
To: [hidden email]
Subject: DICOM Import/Export

Hi

I'm a new user of ImageJ and I was trying to install the DICOM import/export plugin but I must be doing something wrong.

I've expanded the dcmie to home folder and moved Dcm to plugins folder.
I've also expanded medianet to home folder.

After all this I still get an error message saying that there is a Plugin or class not found.

Can someone please help me?

Thank you

Alexandre

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html


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[Alexandre Rainha Campos]

Yes. I did.

Alexandre

No dia 30/04/2013, às 19:36, "Becksfort, Jared" <[hidden email]> escreveu:

> Have you restarted ImageJ yet?
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Alexandre Rainha Campos
> Sent: Tuesday, April 30, 2013 1:24 PM
> To: [hidden email]
> Subject: DICOM Import/Export
>
> Hi
>
> I'm a new user of ImageJ and I was trying to install the DICOM import/export plugin but I must be doing something wrong.
>
> I've expanded the dcmie to home folder and moved Dcm to plugins folder.
> I've also expanded medianet to home folder.
>
> After all this I still get an error message saying that there is a Plugin or class not found.
>
> Can someone please help me?
>
> Thank you
>
> Alexandre
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>
> Email Disclaimer:  www.stjude.org/emaildisclaimer
> Consultation Disclaimer:  www.stjude.org/consultationdisclaimer
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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[bbtee]

Did anyone find a solution with this issue? I am experiencing the same problem, trying to convert a stack of .tiff to .dcm and error message says: "Plugin or class not found: 'Dcm_Export'".

Update:
I can save the .tiff stack as either .dcm stack or image sequence in File -> save as -> save DICOM. However, neither .dcm stack or image sequence can be opened in other software eg Mimics or ITK-Snap. Did I miss anything in the process?

Please help.

[ctrueden]

Hi bbtee and Alexandre,

> "Plugin or class not found: 'Dcm_Export'".
> I've expanded the dcmie to home folder and moved Dcm to plugins folder.

You also need to move the "lib" folder into the plugins directory, too.
Those JAR files are required for the Dcm plugins to work. It is simplest to
just unpack the *entire* ZIP into ImageJ's plugins folder directly.

It would be better if the authors would package these plugins as a simple
JAR file (or even better: as a Fiji update site:
http://fiji.sc/How_to_set_up_and_populate_an_update_site), but
unfortunately they did not.

HTH,
Curtis

P.S. For those interested, they are talking about the DICOM plugins from:
http://www.iftm.de/telemedizin/dcmimex.htm


On Fri, Aug 2, 2013 at 8:38 AM, bbtee <[hidden email]> wrote:

> Does anyone found a solution with this issue? I am experiencing the same
> problem, trying to convert a stack of .tiff to .dcm and error message says:
> "Plugin or class not found: 'Dcm_Export'".
>
> Please help.
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/DICOM-Import-Export-tp5002871p5004283.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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[bbtee]

Hi Curtis,

Thanks for your reply. I tried your suggestion and a different error window "Exception" came up with more errors:

ImageJ 1.47v; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 22MB of 6110MB (<1%)
 
org.dcm4che.Implementation$ConfigurationError: class not found: org.dcm4cheri.dict.DictionaryFactoryImpl
        at org.dcm4che.Implementation.findFactory(Unknown Source)
        at org.dcm4che.dict.DictionaryFactory.getInstance(Unknown Source)
        at de.iftm.dcm4che.dcmie.imp.FileInfoPanel.setUp(FileInfoPanel.java:60)
        at de.iftm.dcm4che.dcmie.imp.DcmImportPanel.setUp(DcmImportPanel.java:77)
        at Dcm_Import.run(Dcm_Import.java:206)
        at ij.IJ.runUserPlugIn(IJ.java:195)
        at ij.IJ.runUserPlugIn(IJ.java:206)
        at ij.IJ.runPlugIn(IJ.java:160)
        at ij.Executer.runCommand(Executer.java:128)
        at ij.Executer.run(Executer.java:64)
        at java.lang.Thread.run(Thread.java:619)
Caused by: java.lang.ClassNotFoundException: org.dcm4cheri.dict.DictionaryFactoryImpl
        at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
        at java.security.AccessController.doPrivileged(Native Method)
        at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
        at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
        at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
        ... 11 more

Then I tried to unzip dcmie in plugins as you suggested. Same issue happened.

Did I miss anything in the process?

[ctrueden]

Hi bbtee,

> I tried your suggestion and a different error window "Exception" came
> up with more errors:

Interesting. It seems that my suggestion does not work for vanilla ImageJ.
But it worked for me using Fiji: http://fiji.sc/. Probably because Fiji
tries harder to make JAR libraries available.

I suggest you use Fiji anyway since it has an automatic updater which is
very convenient.

Regards,
Curtis


On Fri, Aug 2, 2013 at 10:14 AM, bbtee <[hidden email]> wrote:

> Hi Curtis,
>
> Thanks for your reply. I tried your suggestion and a different error window
> "Exception" came up with more errors:
>
> ImageJ 1.47v; Java 1.6.0_20 [64-bit]; Windows 7 6.1; 22MB of 6110MB (<1%)
>
> org.dcm4che.Implementation$ConfigurationError: class not found:
> org.dcm4cheri.dict.DictionaryFactoryImpl
>         at org.dcm4che.Implementation.findFactory(Unknown Source)
>         at org.dcm4che.dict.DictionaryFactory.getInstance(Unknown Source)
>         at
> de.iftm.dcm4che.dcmie.imp.FileInfoPanel.setUp(FileInfoPanel.java:60)
>         at
> de.iftm.dcm4che.dcmie.imp.DcmImportPanel.setUp(DcmImportPanel.java:77)
>         at Dcm_Import.run(Dcm_Import.java:206)
>         at ij.IJ.runUserPlugIn(IJ.java:195)
>         at ij.IJ.runUserPlugIn(IJ.java:206)
>         at ij.IJ.runPlugIn(IJ.java:160)
>         at ij.Executer.runCommand(Executer.java:128)
>         at ij.Executer.run(Executer.java:64)
>         at java.lang.Thread.run(Thread.java:619)
> Caused by: java.lang.ClassNotFoundException:
> org.dcm4cheri.dict.DictionaryFactoryImpl
>         at java.net.URLClassLoader$1.run(URLClassLoader.java:202)
>         at java.security.AccessController.doPrivileged(Native Method)
>         at java.net.URLClassLoader.findClass(URLClassLoader.java:190)
>         at java.lang.ClassLoader.loadClass(ClassLoader.java:307)
>         at sun.misc.Launcher$AppClassLoader.loadClass(Launcher.java:301)
>         at java.lang.ClassLoader.loadClass(ClassLoader.java:248)
>         ... 11 more
>
> Then I tried to unzip dcmie in plugins as you suggested. Same issue
> happened.
>
> Did I miss anything in the process?
>
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/DICOM-Import-Export-tp5002871p5004290.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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[rushwkd]

Hey guys.
I finally figure out how to install Dcim export on ImageJ
Check the uploaded docx file.
good luck
installation_imageJ_dcim.docx