DICOM_TAG errors in Fiji

[Krs5]

Dear all,

I noticed a difference in reading DICOM tags in macros between ImageJ and Fiji. In ImageJ (daily build) using getInfo(DICOM_TAG) gives the correct information, in Fiji (up-to-date, ImageJ daily build) I get a 1. No difference between java 1.6 and 1.8

Also when opening a DICOM file in Fiji the scale and contrast information is lost, presumable because this info is also not read correctly from the DICOM file. An older versions of Fiji (tested rc6, 1.49b) displays correctly and also runs the macro correctly.

Do others see the same?

Best wishes

Kees

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[ctrueden]

Hi Kees,

If you go to Edit > Options > ImageJ2, do you have the SCIFIO option
checked? If so, that changes how DICOM is handled. If it unchecked though,
then these differences are surprising.

Regards,
Curtis

--
Curtis Rueden
LOCI software architect - http://loci.wisc.edu/software
ImageJ2 lead, Fiji maintainer - http://imagej.net/User:Rueden
Did you know ImageJ has a forum? http://forum.imagej.net/


On Mon, Mar 21, 2016 at 6:40 PM, Straatman, Kees (Dr.) <[hidden email]
> wrote:

> Dear all,
>
> I noticed a difference in reading DICOM tags in macros between ImageJ and
> Fiji. In ImageJ (daily build) using getInfo(DICOM_TAG) gives the correct
> information, in Fiji (up-to-date, ImageJ daily build) I get a 1. No
> difference between java 1.6 and 1.8
>
> Also when opening a DICOM file in Fiji the scale and contrast information
> is lost, presumable because this info is also not read correctly from the
> DICOM file. An older versions of Fiji (tested rc6, 1.49b) displays
> correctly and also runs the macro correctly.
>
> Do others see the same?
>
> Best wishes
>
> Kees
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html