Debugging Jython scripts for FIJI

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Debugging Jython scripts for FIJI

silkensoy
Hello,

I have recently started scripting ImageJ using the Jython interpreter that is packaged with Fiji.  Everything is working smoothly, but my debugging is a bit slow with just the print statement.  I would love to have the convenience of a modern IDE.

Is it possible to set up ImageJ Jython scripting in Eclipse or NetBeans?  If so, are there any tutorials out there on how to do it?
Thanks in advance,
-i
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Re: Debugging Jython scripts for FIJI

ctrueden
Hi i,

I do not know of a guide for developing Fiji Jython scripts in Eclipse, but
it is probably doable by starting with an ImageJ Eclipse configuration, and
then using the PyDev plugin for Jython support:


http://imagejdocu.tudor.lu/doku.php?id=howto:plugins:the_imagej_eclipse_howto
  http://pydev.org/

If you get it set up, and are feeling ambitious, you could write a setup
guide for the Fiji wiki.

-Curtis

On Thu, Jun 2, 2011 at 7:15 AM, silkensoy <[hidden email]> wrote:

> Hello,
>
> I have recently started scripting ImageJ using the Jython interpreter that
> is packaged with Fiji.  Everything is working smoothly, but my debugging is
> a bit slow with just the print statement.  I would love to have the
> convenience of a modern IDE.
>
> Is it possible to set up ImageJ Jython scripting in Eclipse or NetBeans?
>  If
> so, are there any tutorials out there on how to do it?
> Thanks in advance,
> -i
>
> --
> View this message in context:
> http://imagej.588099.n2.nabble.com/Debugging-Jython-scripts-for-FIJI-tp6430910p6430910.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
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Re: Debugging Jython scripts for FIJI

Nathaniel Ryckman
In reply to this post by silkensoy
silkensoy wrote
Hello,

I have recently started scripting ImageJ using the Jython interpreter that is packaged with Fiji.  Everything is working smoothly, but my debugging is a bit slow with just the print statement.  I would love to have the convenience of a modern IDE.

Is it possible to set up ImageJ Jython scripting in Eclipse or NetBeans?  If so, are there any tutorials out there on how to do it?
Thanks in advance,
-i
http://cmci.embl.de/documents/100825imagej_jython_eclipse
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Re: Debugging Jython scripts for FIJI

silkensoy
In reply to this post by silkensoy
Thank you very much! I will give it a go and report back if I have problems/suggestions