Delete ROIs from ROI manager based on measurement results

[MichBLOSUM]

Hi list,

Is there any way to automatically delete with a MACRO multiple ROIs from ROI manager based on the data of the Results table (like area or levels of gray)?
I've been looking for a function for MACRO that does that but I can't find anything.

Thanks in advance!

[Cammer, Michael]

We have done something similar by measuring each ROI, getting the results, testing the relevant results with if statements, and then renaming the ROIs (you could delete).
You can measure all the ROIs and the iterate through them and the results table or you can measure and judge in one step.


_________________________________________
Michael Cammer, Optical Microscopy Specialist
http://ocs.med.nyu.edu/microscopy
http://microscopynotes.com/
Cell: [phone]

________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of MichBLOSUM [[hidden email]]
Sent: Wednesday, May 11, 2016 6:13 PM
To: [hidden email]
Subject: Delete ROIs from ROI manager based on measurement results

Hi list,

Is there any way to automatically delete with a MACRO multiple ROIs from ROI
manager based on the data of the Results table (like area or levels of
gray)?
I've been looking for a function for MACRO that does that but I can't find
anything.

Thanks in advance!




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[MichBLOSUM]

That sounds pretty much like what I want to do :)
Can you show me how to do it and how do I have to write it in a MACRO?

Thank you.



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[Krs5]

I have some code on my website (http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif/software-1/imagej-macros) that deletes ROIs from the image, the ROI manager and results table when the user left mouse-click on a ROI name in the image. I have not recently checked if everything still works and have no time at the moent to look at it but I would think it should be possible to adapt this code to use data from the results table instead of the mouse-click.

Kees


Dr Ir K.R. Straatman
Senior Experimental Officer
Advanced Imaging Facility
Centre for Core Biotechnology Services
University of Leicester
http://www2.le.ac.uk/colleges/medbiopsych/facilities-and-services/cbs/lite/aif

 

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Cammer, Michael
Sent: 12 May 2016 00:20
To: [hidden email]
Subject: Re: Delete ROIs from ROI manager based on measurement results

We have done something similar by measuring each ROI, getting the results, testing the relevant results with if statements, and then renaming the ROIs (you could delete).
You can measure all the ROIs and the iterate through them and the results table or you can measure and judge in one step.


_________________________________________
Michael Cammer, Optical Microscopy Specialist http://ocs.med.nyu.edu/microscopy http://microscopynotes.com/
Cell: [phone]

________________________________________
From: ImageJ Interest Group [[hidden email]] on behalf of MichBLOSUM [[hidden email]]
Sent: Wednesday, May 11, 2016 6:13 PM
To: [hidden email]
Subject: Delete ROIs from ROI manager based on measurement results

Hi list,

Is there any way to automatically delete with a MACRO multiple ROIs from ROI manager based on the data of the Results table (like area or levels of gray)?
I've been looking for a function for MACRO that does that but I can't find anything.

Thanks in advance!

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[MichBLOSUM]

Thanks!

I'll try to fix it to make it work as I want. But if I can't it makes things easier anyways. :)