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Hi,
Thanks to everyone for help in the past. At the minute I am trying to get a macro to stop at a certain point during the analysis of each image and present the modified and thresholded image to me so that I can select a certain part of the image by drawing around it.
At the moment I am blocked because when i use commands like open() or selectWindow() then the image is not displayed. I guess it is just opened into memory to allow imageJ to manipulate it but without showing the image to the user.
After I am using waitForUser("Draw around object\ncheck the circle is complete,\nthen click OK.");
ImagaJ is opening the window asking me to draw around the object but there is no image open to draw around.
The section of macro I'm talking about is:
open("C:\\Users\\andrew\\Desktop\\ImageJ\\green.jpg");
selectWindow("green.jpg");
setThreshold(10, 255);
setTool("freehand");
waitForUser("Draw around object\ncheck the circle is complete,\nthen click OK.");
run("Set Measurements...", "area mean min integrated redirect=None decimal=0");
run("Measure");
Thanks in advance for any help.
Andy
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