Hi again,
Hmmm. That is unexpected and it certainly was a bum steer.
The following plugin works around this by simply copying the
ImageProcessor for each slice in the original stack to the newly
formed one. It is a punt, but it works here.
//**BEGIN HERE
import ij.*;
import ij.process.*;
import ij.gui.*;
import java.awt.*;
import ij.plugin.filter.*;
public class Filter_Plugin implements PlugInFilter {
ImagePlus imp;
public int setup(String arg, ImagePlus imp) {
this.imp = imp;
return DOES_ALL;
}
public void run(ImageProcessor ip) {
ImageStack origStack = imp.getImageStack();
ImageStack newStack = new ImageStack(imp.getWidth(), imp.getHeight());
int slice = 1;
for (int i = 0; i< imp.getNSlices(); i++){
slice = i+1;
imp.setSlice(slice);
newStack.addSlice("slice="+slice,
(origStack.getProcessor(slice)).duplicate() );
} //i-loop
ImagePlus newImp = new ImagePlus("myimage", newStack);
newImp.show();
}
}
//** END HERE
On Oct 8, 2009, at 6:44 PM, David Webster wrote:
> I'm trying imp = IJ.getImage().
>
> David Webster
>
> On Thu, Oct 8, 2009 at 12:40 PM, Ben Tupper <
[hidden email]>
> wrote:
>
>> Hi,
>>
>>
>> On Oct 8, 2009, at 2:58 PM, David William Webster wrote:
>>
>> All,
>>>
>>> If I want to duplicate a Stack, I assume I must do it either slice
>>> by
>>> slice or use;
>>>
>>> IJ.run(imp, "Duplicate...", "title=myimage duplicate range=1-
>>> maxslice");
>>>
>>> where imp is an ImagePlus object.
>>>
>>> If I use the IJ.run() how do I get the ImagePlus reference for the
>>> reult.
>>> Is there an easier way to do this? I may be missing it again, but
>>> I don't
>>> see anything in Plugins/Stacks that obviously does this.
>>>
>>
>> I think you have a couple of choices. Using IJ you can
>>
>> imp = IJ.getImage()
>>
>> ... which assumes that the new image is the one you created and is
>> active.
>>
>> Alternatively, you can use
>>
>> imp = WindowManager.getImage("myimage");
>>
>> which works of there really is just one "myimage" instantiated.
>>
>>
>>
>> Cheers,
>> Ben
>>
Cheers,
Ben
Locked
