ImageJ

FIJI update problem from 16 December 2014

‹ Previous Topic Next Topic ›
 
classic Classic list List threaded Threaded
♦
♦
 2 messages Options
Bohumil Maco
Reply | Threaded
Open this post in threaded view
♦
♦
|

FIJI update problem from 16 December 2014

Bohumil Maco
Hallo there,


Last few months I was using FIJI and TrakEM2 without any problems and I was doing regular updates. My Fiji 2.0 is running on Win7 64 bit, Java 7.

After yesterday`s update I am noticing some problem especially with TrakEM2: when I tried to show my selected area list in 3D I am receiving the error message pasted bellow.
I am really desperate, I reinstall the latest version of FIJI from FIJI web site but the problem still persists. I am not sure if even other problems will appear, this I need to test...

Please, any suggestions? Anything will be greatly appreciate.

Thank you very much.

Bohumil Maco


==================
ERROR:
java.util.concurrent.
ExecutionException: java.lang.NoSuchMethodError:
marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
    at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
    at java.util.concurrent.FutureTask.get(FutureTask.java:83)
    at ini.trakem2.display.Display3D$6$3.run(Display3D.java:524)
    at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
    at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
    at java.util.concurrent.FutureTask.run(FutureTask.java:138)
    at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
    at java.lang.Thread.run(Thread.java:662)
Caused by: java.lang.NoSuchMethodError:
marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
    at ini.trakem2.utils.AreaUtils.generateTriangles(AreaUtils.java:144)
    at ini.trakem2.display.AreaList.generateTriangles(AreaList.java:712)
    at ini.trakem2.display.Display3D$8.call(Display3D.java:796)
    at ini.trakem2.display.Display3D$8.call(Display3D.java:762)
    at ini.trakem2.display.Display3D$6$2.call(Display3D.java:501)
    at ini.trakem2.display.Display3D$6$2.call(Display3D.java:497)
    ... 5 more
==> Caused by:
java.lang.NoSuchMethodError:
marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
    at ini.trakem2.utils.AreaUtils.generateTriangles(AreaUtils.java:144)
    at ini.trakem2.display.AreaList.generateTriangles(AreaList.java:712)
    at ini.trakem2.display.Display3D$8.call(Display3D.java:796)
    at ini.trakem2.display.Display3D$8.call(Display3D.java:762)
    at ini.trakem2.display.Display3D$6$2.call(Display3D.java:501)
    at ini.trakem2.display.Display3D$6$2.call(Display3D.java:497)
    at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
    at java.util.concurrent.FutureTask.run(FutureTask.java:138)
    at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
    at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
    at java.lang.Thread.run(Thread.java:662)
==================

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
ctrueden
Reply | Threaded
Open this post in threaded view
♦
♦
|

Re: FIJI update problem from 16 December 2014

ctrueden
Hi Bohumil,

> I am noticing some problem especially with TrakEM2

Please use the Help > Report a Bug command to file a bug report. See
http://imagej.net/Bugs for details.

> I am really desperate, I reinstall the latest version of FIJI
> from FIJI web site but the problem still persists.

Until the problem is fixed, I suggest downloading one of the "Life-Line"
versions, starting with the 2014-Nov-25 version and working backward until
you find a package that works for your needs.

Regards,
Curtis

On Wed, Dec 17, 2014 at 6:51 AM, Bohumil Maco <[hidden email]> wrote:

>
> Hallo there,
>
>
> Last few months I was using FIJI and TrakEM2 without any problems and I
> was doing regular updates. My Fiji 2.0 is running on Win7 64 bit, Java 7.
>
> After yesterday`s update I am noticing some problem especially with
> TrakEM2: when I tried to show my selected area list in 3D I am receiving
> the error message pasted bellow.
> I am really desperate, I reinstall the latest version of FIJI from FIJI
> web site but the problem still persists. I am not sure if even other
> problems will appear, this I need to test...
>
> Please, any suggestions? Anything will be greatly appreciate.
>
> Thank you very much.
>
> Bohumil Maco
>
>
> ==================
> ERROR:
> java.util.concurrent.
> ExecutionException: java.lang.NoSuchMethodError:
>
> marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
>     at java.util.concurrent.FutureTask$Sync.innerGet(FutureTask.java:222)
>     at java.util.concurrent.FutureTask.get(FutureTask.java:83)
>     at ini.trakem2.display.Display3D$6$3.run(Display3D.java:524)
>     at
> java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:441)
>     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>     at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>     at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
>     at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
>     at java.lang.Thread.run(Thread.java:662)
> Caused by: java.lang.NoSuchMethodError:
>
> marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
>     at ini.trakem2.utils.AreaUtils.generateTriangles(AreaUtils.java:144)
>     at ini.trakem2.display.AreaList.generateTriangles(AreaList.java:712)
>     at ini.trakem2.display.Display3D$8.call(Display3D.java:796)
>     at ini.trakem2.display.Display3D$8.call(Display3D.java:762)
>     at ini.trakem2.display.Display3D$6$2.call(Display3D.java:501)
>     at ini.trakem2.display.Display3D$6$2.call(Display3D.java:497)
>     ... 5 more
> ==> Caused by:
> java.lang.NoSuchMethodError:
>
> marchingcubes.MCTriangulator.getTriangles(Lmpicbg/imglib/image/Image;I[F)Ljava/util/List;
>     at ini.trakem2.utils.AreaUtils.generateTriangles(AreaUtils.java:144)
>     at ini.trakem2.display.AreaList.generateTriangles(AreaList.java:712)
>     at ini.trakem2.display.Display3D$8.call(Display3D.java:796)
>     at ini.trakem2.display.Display3D$8.call(Display3D.java:762)
>     at ini.trakem2.display.Display3D$6$2.call(Display3D.java:501)
>     at ini.trakem2.display.Display3D$6$2.call(Display3D.java:497)
>     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303)
>     at java.util.concurrent.FutureTask.run(FutureTask.java:138)
>     at
> java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:886)
>     at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:908)
>     at java.lang.Thread.run(Thread.java:662)
> ==================
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html
Free forum by Nabble Edit this page