FRAP Profiler Plugin

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FRAP Profiler Plugin

Nagendra Babu
Hi,

I am looking for FRAP Profiler Plugin to download; but can not find it. Can I request for the plugin with the USER GUIDE?

Thank you.

Best regards
Nagendra Babu T
PhD Student
Department of Pharmacology
University of Cambridge
Cambridge, UK
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Re: FRAP Profiler plugin

Jeff Hardin
Dear Babu,
Sorry! I wrote this as a bit of a hacked adaptation of Tony Collins’ original plugin. Alas, there is no user guide, but it’s on my to-do list thus summer. The key is that it uses the ROI manager to store the reference region and FRAP ROIs, and then runs the plugin, giving you options for one- or two-parameter exponential decay curve fits.

You can get everything here, where there is also a sample large TIFF stack data set from my lab for download:
http://worms.zoology.wisc.edu/research/4d/4d.html#frap

The plugin assumes you know a bit about ImageJ (how to save data to a text file, what the ROI Manager is, etc.).

Cheers,
Jeff

On Aug 13, 2015, at 11:00 PM, IMAGEJ automatic digest system <[hidden email]<mailto:[hidden email]>> wrote:

Date:    Thu, 13 Aug 2015 14:34:32 -0700
From:    Nagendra Babu <[hidden email]<mailto:[hidden email]>>
Subject: FRAP Profiler Plugin

Hi,

I am looking for FRAP Profiler Plugin to download; but can not find it. Can
I request for the plugin with the USER GUIDE?

Thank you.

Best regards
Nagendra Babu T
PhD Student
Department of Pharmacology
University of Cambridge
Cambridge, UK

----------------------------------------
Jeff Hardin
Professor and Chair, Department of Zoology
Director, Biology Core Curriculum
University of Wisconsin
1117 W. Johnson St.
Madison, WI 53706
voice: (608) 262-9634
fax: (608) 262-7319
email: [hidden email]<mailto:[hidden email]>
web page: http://worms.zoology.wisc.edu


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Re: FRAP Profiler plugin

Nagendra Babu
Dear Jeff,

Many thanks for the reply and the plugin. I use ImageJ already; hence, I
believe I should be able to figure out using the plugin without much
hassle.

Thanks again!

Best regards
Nagendra Babu

On 2015-08-14 15:08, Jeff Hardin [via ImageJ] wrote:

> Dear Babu,
> Sorry! I wrote this as a bit of a hacked adaptation of Tony Collins’
> original plugin. Alas, there is no user guide, but it’s on my to-do
> list thus summer. The key is that it uses the ROI manager to store the
> reference region and FRAP ROIs, and then runs the plugin, giving you
> options for one- or two-parameter exponential decay curve fits.
>
> You can get everything here, where there is also a sample large TIFF
> stack data set from my lab for download:
> http://worms.zoology.wisc.edu/research/4d/4d.html#frap [1]
>
> The plugin assumes you know a bit about ImageJ (how to save data to a
> text file, what the ROI Manager is, etc.).
>
> Cheers,
> Jeff
>
> On Aug 13, 2015, at 11:00 PM, IMAGEJ automatic digest system <[hidden
> email] [2]<mailto:[hidden email] [3]>> wrote:
>
> Date: Thu, 13 Aug 2015 14:34:32 -0700
> From: Nagendra Babu <[hidden email] [4]<mailto:[hidden email] [5]>>
> Subject: FRAP Profiler Plugin
>
> Hi,
>
> I am looking for FRAP Profiler Plugin to download; but can not find
> it. Can
> I request for the plugin with the USER GUIDE?
>
> Thank you.
>
> Best regards
> Nagendra Babu T
> PhD Student
> Department of Pharmacology
> University of Cambridge
> Cambridge, UK
>
> ----------------------------------------
> Jeff Hardin
> Professor and Chair, Department of Zoology
> Director, Biology Core Curriculum
> University of Wisconsin
> 1117 W. Johnson St.
> Madison, WI 53706
> voice: (608) 262-9634
> fax: (608) 262-7319
> email: [hidden email] [6]<mailto:[hidden email] [7]>
> web page: http://worms.zoology.wisc.edu [8]
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html [9]
>
> -------------------------
>
> If you reply to this email, your message will be added to the
> discussion below:
> http://imagej.1557.x6.nabble.com/FRAP-Profiler-Plugin-tp5014021p5014032.html
> [10]
>  To unsubscribe from FRAP Profiler Plugin, click here [11].
>  NAML [12]
>
> Links:
> ------
> [1] http://worms.zoology.wisc.edu/research/4d/4d.html#frap
> [2]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=0
> [3]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=1
> [4]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=2
> [5]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=3
> [6]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=4
> [7]
> http://webmail-3.hermes.cam.ac.uk/user/SendEmail.jtp?type=node&node=5014032&i=5
> [8] http://worms.zoology.wisc.edu
> [9] http://imagej.nih.gov/ij/list.html
> [10]
> http://imagej.1557.x6.nabble.com/FRAP-Profiler-Plugin-tp5014021p5014032.html
> [11]
> [12]
>
http://imagej.1557.x6.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&amp;id=instant_html%21nabble%3Aemail.naml&amp;base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&amp;breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml

--
Nagendra Babu Thillaiappan
PhD Student - Taylor's Lab
Department of Pharmacology
University of Cambridge
Tennis Court Road
Cambridge CB2 1PD
United Kingdom