FRAP plugin

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FRAP plugin

Jeff Hardin
Dear Friends,

Although the site appears to be down this morning, i noticed that  
Tony Collins describes a FRAP_Profiler plugin on the McMaster  
Biophotonics web site:

http://www.macbiophotonics.ca/imagej/intensity_vs_time_ana.htm#FRAP

However, it doesn't seem to be in the downloadable version of his  
collection. Did I miss something? Might anyone have this or know  
where it's available?

Better yet, does anyone have an ImageJ plugin that can handle data  
from an Olympus FluoView 1000 for doing curve fitting of FRAP data  
generated by this system? I'd like to avoid multiple applications if  
possible...

Many thanks,

Jeff
----------------------------------------------
Jeff Hardin
Professor, Department of Zoology
Director, Biology Core Curriculum
University of Wisconsin
1117 W. Johnson St.
Madison, WI 53706
voice: (608) 262-9634
fax: (608) 262-7319
email: [hidden email]
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Re: FRAP plugin

ctrueden
Hi Jeff,

According to the MBF version log, the FRAP profiler plugin was added on Aug
28. If the latest bundle doesn't have it, it must be an omission in the
distribution.

As for Olympus FluoView 1000 format, you know that Bio-Formats can read
FV1000 OIF & OIB formats, right?

Hopefully the MacBiophotonics site will be back online soon...

-Curtis

On Tue, Apr 1, 2008 at 8:22 AM, Jeff Hardin <[hidden email]> wrote:

> Dear Friends,
>
> Although the site appears to be down this morning, i noticed that Tony
> Collins describes a FRAP_Profiler plugin on the McMaster Biophotonics web
> site:
>
> http://www.macbiophotonics.ca/imagej/intensity_vs_time_ana.htm#FRAP
>
> However, it doesn't seem to be in the downloadable version of his
> collection. Did I miss something? Might anyone have this or know where it's
> available?
>
> Better yet, does anyone have an ImageJ plugin that can handle data from an
> Olympus FluoView 1000 for doing curve fitting of FRAP data generated by this
> system? I'd like to avoid multiple applications if possible...
>
> Many thanks,
>
> Jeff
> ----------------------------------------------
> Jeff Hardin
> Professor, Department of Zoology
> Director, Biology Core Curriculum
> University of Wisconsin
> 1117 W. Johnson St.
> Madison, WI 53706
> voice: (608) 262-9634
> fax: (608) 262-7319
> email: [hidden email]
>
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Re: FRAP plugin

Tony Collins-4
I've sent the plugin to Jeff offline.

Jeff has also raised the point that a custom fit for the curvefitter class would be nice as, with FRAP, one type of fit does not fit all!

I thought there was a custom curvefitter plugin but I can't locate it now. Has anybody an example of the curvefitter being used with a custom equation?

Cheers,

Tony


________________________________________
From: ImageJ Interest Group [[hidden email]] On Behalf Of Curtis Rueden [[hidden email]]
Sent: Friday, April 04, 2008 5:14 PM
To: [hidden email]
Subject: Re: FRAP plugin

Hi Jeff,

According to the MBF version log, the FRAP profiler plugin was added on Aug
28. If the latest bundle doesn't have it, it must be an omission in the
distribution.

As for Olympus FluoView 1000 format, you know that Bio-Formats can read
FV1000 OIF & OIB formats, right?

Hopefully the MacBiophotonics site will be back online soon...

-Curtis

On Tue, Apr 1, 2008 at 8:22 AM, Jeff Hardin <[hidden email]> wrote:

> Dear Friends,
>
> Although the site appears to be down this morning, i noticed that Tony
> Collins describes a FRAP_Profiler plugin on the McMaster Biophotonics web
> site:
>
> http://www.macbiophotonics.ca/imagej/intensity_vs_time_ana.htm#FRAP
>
> However, it doesn't seem to be in the downloadable version of his
> collection. Did I miss something? Might anyone have this or know where it's
> available?
>
> Better yet, does anyone have an ImageJ plugin that can handle data from an
> Olympus FluoView 1000 for doing curve fitting of FRAP data generated by this
> system? I'd like to avoid multiple applications if possible...
>
> Many thanks,
>
> Jeff
> ----------------------------------------------
> Jeff Hardin
> Professor, Department of Zoology
> Director, Biology Core Curriculum
> University of Wisconsin
> 1117 W. Johnson St.
> Madison, WI 53706
> voice: (608) 262-9634
> fax: (608) 262-7319
> email: [hidden email]
>
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Re: FRAP plugin

Nagendra Babu
In reply to this post by Jeff Hardin
Hi,

I have been searching to download the plugin FRAP profiler. But I can't find it at ImageJ site. Is there any possibility that I can get the FRAP profiler plugin along with user guide?

Thank you.

Best regards
Babu

Nagendra Babu T
PhD Student
University of Cambridge
Cambridge, UK