Fiji updater

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Fiji updater

Knecht, David
In the manage update sites list, there are several different Bioformats sites listed:

Bioformats
Loci
Bioformats 4
Bioformats 5

What should be checked to update Bioformats????

Dr. David Knecht
Professor of Molecular and Cell Biology
Core Microscopy Facility Director
University of Connecticut
Storrs, CT 06269
860-486-2200

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Re: Fiji updater

Mark Hiner-2
Hi David,

>In the manage update sites list, there are several different Bioformats
sites listed:

I'm not sure where you're seeing the Bio-Formats 4/5 sites... those are
outdated, and are no longer listed on http://fiji.sc/List_of_update_sites
(when managing update sites from Fiji, the list of sites is generated from
that page)

> What should be checked to update Bioformats????

Actually, Bio-Formats 5.0.2 ships with Fiji. From the "Help > Update" menu
if you type "bio-formats" in the search menu, it will filter all the
bio-formats jars out. You can click on individual jars to see some extra
information on them. You should see a number of entries under
/jars/bio-formats, and they all come from the update site "Fiji". See this
screenshot for an example of what my update dialog looks like:
http://hinerm.imagej.net/update-fiji.png

If you'd like the daily build of Bio-Formats, then you should enable the
"Bioformats" update site, based on its description on
http://fiji.sc/List_of_update_sites.

Hope that helps,
Mark



On Thu, Aug 7, 2014 at 2:20 PM, Knecht, David <[hidden email]>
wrote:

> In the manage update sites list, there are several different Bioformats
> sites listed:
>
> Bioformats
> Loci
> Bioformats 4
> Bioformats 5
>
> What should be checked to update Bioformats????
>
> Dr. David Knecht
> Professor of Molecular and Cell Biology
> Core Microscopy Facility Director
> University of Connecticut
> Storrs, CT 06269
> 860-486-2200
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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Re: Fiji updater

ctrueden
Hi Mark, Dave & everyone,

> I'm not sure where you're seeing the Bio-Formats 4/5 sites... those
> are outdated, and are no longer listed on
> http://fiji.sc/List_of_update_sites (when managing update sites from
> Fiji, the list of sites is generated from that page)

Probably Dave sees them because there _used to be_ update sites with those
names. And existing installations of Fiji do not "clear out" obsolete
update sites which were since removed from the list of update sites page.

It should be fine to just delete the "Bio-Formats 4" and "Bio-Formats 5"
entries from the list.

Regards,
Curtis


On Thu, Aug 7, 2014 at 2:33 PM, Mark Hiner <[hidden email]> wrote:

> Hi David,
>
> >In the manage update sites list, there are several different Bioformats
> sites listed:
>
> I'm not sure where you're seeing the Bio-Formats 4/5 sites... those are
> outdated, and are no longer listed on http://fiji.sc/List_of_update_sites
> (when managing update sites from Fiji, the list of sites is generated from
> that page)
>
> > What should be checked to update Bioformats????
>
> Actually, Bio-Formats 5.0.2 ships with Fiji. From the "Help > Update" menu
> if you type "bio-formats" in the search menu, it will filter all the
> bio-formats jars out. You can click on individual jars to see some extra
> information on them. You should see a number of entries under
> /jars/bio-formats, and they all come from the update site "Fiji". See this
> screenshot for an example of what my update dialog looks like:
> http://hinerm.imagej.net/update-fiji.png
>
> If you'd like the daily build of Bio-Formats, then you should enable the
> "Bioformats" update site, based on its description on
> http://fiji.sc/List_of_update_sites.
>
> Hope that helps,
> Mark
>
>
>
> On Thu, Aug 7, 2014 at 2:20 PM, Knecht, David <[hidden email]>
> wrote:
>
> > In the manage update sites list, there are several different Bioformats
> > sites listed:
> >
> > Bioformats
> > Loci
> > Bioformats 4
> > Bioformats 5
> >
> > What should be checked to update Bioformats????
> >
> > Dr. David Knecht
> > Professor of Molecular and Cell Biology
> > Core Microscopy Facility Director
> > University of Connecticut
> > Storrs, CT 06269
> > 860-486-2200
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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