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Filing incomplete holes

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Filing incomplete holes

Chris Wilson
I'm new to ImageJ and am trying to analyse some CT scans of coral.

I'm trying to analyse the connectivity and branches within the coral skeleton but as many of the coral branches are hollow (often incomplete holes too) some of the processing tools do not function correctly.

Is there a way to fill these holes? I've tried Fill Holes in BoneJ but that appears to only fill complete holes - I need to find incomplete circles, complete them, and finally fill them.

Any ideas?

Thanks,
Chris

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