Help! Block Dialog Boxes in Macro
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Help! Block Dialog Boxes in Macro
 
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Hi All,
this is killing my macro--is there any way to block the dialogs from coming up when opening images? I read the documentation, and it doesn't seem that this should happen. I've tried batch mode as well, to no avail. JPK -- ******************************************* Jacob Pearson Keller, PhD Postdoctoral Associate HHMI Janelia Farms Research Campus email: [hidden email] ******************************************* -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Jacob,
Can you send an example macro that demonstrates the issue? -Curtis On Tue, Jan 15, 2013 at 4:08 PM, Jacob Keller < [hidden email]> wrote: > Hi All, > > this is killing my macro--is there any way to block the dialogs from > coming up when opening images? I read the documentation, and it > doesn't seem that this should happen. I've tried batch mode as well, > to no avail. > > JPK > > -- > ******************************************* > Jacob Pearson Keller, PhD > Postdoctoral Associate > HHMI Janelia Farms Research Campus > email: [hidden email] > ******************************************* > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: Help! Block Dialog Boxes in Macro
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Here's the [probably poorly-written] code for the macro.
JPK for (i=0; i<10; i++) { for (j=0; j<10; j++) { for (k=0; k<10; k++) { one = d2s(i, 0); two = d2s(j, 0); thr = d2s(k, 0); setBatchMode(true); filename = "C:\\Users\\Jacob\\Desktop\\ZfishBrains\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0.jp2"; print(filename); open(filename); saveAs("Tiff", "X:\\Zebrafish_Brain_Images\\tifs\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0x.tif"); close(); }}} On Tue, Jan 15, 2013 at 5:13 PM, Curtis Rueden <[hidden email]> wrote: > Hi Jacob, > > Can you send an example macro that demonstrates the issue? > > -Curtis > > > On Tue, Jan 15, 2013 at 4:08 PM, Jacob Keller < > [hidden email]> wrote: > >> Hi All, >> >> this is killing my macro--is there any way to block the dialogs from >> coming up when opening images? I read the documentation, and it >> doesn't seem that this should happen. I've tried batch mode as well, >> to no avail. >> >> JPK >> >> -- >> ******************************************* >> Jacob Pearson Keller, PhD >> Postdoctoral Associate >> HHMI Janelia Farms Research Campus >> email: [hidden email] >> ******************************************* >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >> > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html -- ******************************************* Jacob Pearson Keller, PhD Postdoctoral Associate HHMI Janelia Farms Research Campus email: [hidden email] ******************************************* -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
Re: Help! Block Dialog Boxes in Macro
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Maybe it has something to do with the source files being
z-slice-stacks themselves and not individual images? But manually this works fine.... JPK On Tue, Jan 15, 2013 at 6:23 PM, Jacob Keller <[hidden email]> wrote: > Here's the [probably poorly-written] code for the macro. > > JPK > > > > for (i=0; i<10; i++) { > for (j=0; j<10; j++) { > for (k=0; k<10; k++) { > one = d2s(i, 0); > two = d2s(j, 0); > thr = d2s(k, 0); > setBatchMode(true); > filename = "C:\\Users\\Jacob\\Desktop\\ZfishBrains\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0.jp2"; > print(filename); > open(filename); > saveAs("Tiff", "X:\\Zebrafish_Brain_Images\\tifs\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0x.tif"); > close(); > }}} > > > On Tue, Jan 15, 2013 at 5:13 PM, Curtis Rueden <[hidden email]> wrote: >> Hi Jacob, >> >> Can you send an example macro that demonstrates the issue? >> >> -Curtis >> >> >> On Tue, Jan 15, 2013 at 4:08 PM, Jacob Keller < >> [hidden email]> wrote: >> >>> Hi All, >>> >>> this is killing my macro--is there any way to block the dialogs from >>> coming up when opening images? I read the documentation, and it >>> doesn't seem that this should happen. I've tried batch mode as well, >>> to no avail. >>> >>> JPK >>> >>> -- >>> ******************************************* >>> Jacob Pearson Keller, PhD >>> Postdoctoral Associate >>> HHMI Janelia Farms Research Campus >>> email: [hidden email] >>> ******************************************* >>> >>> -- >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html >>> >> >> -- >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > -- > ******************************************* > Jacob Pearson Keller, PhD > Postdoctoral Associate > HHMI Janelia Farms Research Campus > email: [hidden email] > ******************************************* -- ******************************************* Jacob Pearson Keller, PhD Postdoctoral Associate HHMI Janelia Farms Research Campus email: [hidden email] ******************************************* -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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Hi Jacob,
Since you sent a very similar question to ome-users, I link to my reply there: http://lists.openmicroscopy.org.uk/pipermail/ome-users/2013-January/003491.html For the ImageJ archives: the link above suggests two macros that may do the job (batch conversion of all image files in a particular directory and/or of a particular format), thus avoiding the original issue of blocking dialog boxes. As I wrote in the other thread: Your macro looks OK to me. Using Plugins > Macros > Record I created a similar macro (which uses the open() and saveAs() functions), and it works without popping up any dialog boxes, even if the output image already exists. So I am not sure what is causing your problem. That said, hopefully one of the above macros will work for you and the issue will be moot. Regards, Curtis On Tue, Jan 15, 2013 at 5:25 PM, Jacob Keller < [hidden email]> wrote: > Maybe it has something to do with the source files being > z-slice-stacks themselves and not individual images? But manually this > works fine.... > > JPK > > On Tue, Jan 15, 2013 at 6:23 PM, Jacob Keller > <[hidden email]> wrote: > > Here's the [probably poorly-written] code for the macro. > > > > JPK > > > > > > > > for (i=0; i<10; i++) { > > for (j=0; j<10; j++) { > > for (k=0; k<10; k++) { > > one = d2s(i, 0); > > two = d2s(j, 0); > > thr = d2s(k, 0); > > setBatchMode(true); > > filename = > "C:\\Users\\Jacob\\Desktop\\ZfishBrains\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0.jp2"; > > print(filename); > > open(filename); > > saveAs("Tiff", > "X:\\Zebrafish_Brain_Images\\tifs\\SPC00_TM00"+one+two+thr+"_ANG000_CM0_CHN00_PH0x.tif"); > > close(); > > }}} > > > > > > On Tue, Jan 15, 2013 at 5:13 PM, Curtis Rueden <[hidden email]> > wrote: > >> Hi Jacob, > >> > >> Can you send an example macro that demonstrates the issue? > >> > >> -Curtis > >> > >> > >> On Tue, Jan 15, 2013 at 4:08 PM, Jacob Keller < > >> [hidden email]> wrote: > >> > >>> Hi All, > >>> > >>> this is killing my macro--is there any way to block the dialogs from > >>> coming up when opening images? I read the documentation, and it > >>> doesn't seem that this should happen. I've tried batch mode as well, > >>> to no avail. > >>> > >>> JPK > >>> > >>> -- > >>> ******************************************* > >>> Jacob Pearson Keller, PhD > >>> Postdoctoral Associate > >>> HHMI Janelia Farms Research Campus > >>> email: [hidden email] > >>> ******************************************* > >>> > >>> -- > >>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > >>> > >> > >> -- > >> ImageJ mailing list: http://imagej.nih.gov/ij/list.html > > > > > > > > -- > > ******************************************* > > Jacob Pearson Keller, PhD > > Postdoctoral Associate > > HHMI Janelia Farms Research Campus > > email: [hidden email] > > ******************************************* > > > > -- > ******************************************* > Jacob Pearson Keller, PhD > Postdoctoral Associate > HHMI Janelia Farms Research Campus > email: [hidden email] > ******************************************* > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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