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Help with saving Image Sequence

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Kelly Burke

Help with saving Image Sequence

I'm saving a stack file (with multiple channels and multiple z positions)
as a bunch of single images using Save As --> Image Sequence.

The default naming of the single images is "stackname_z001_c001.tif" where
the z and c correspond to the z position and channel of the specific image.

How can I make it save as "filename_c001_z001.tif" instead? I just want to
switch the order of saving the channel position and z position.

Thanks!

Kelly

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Romain Guiet

Re: Help with saving Image Sequence

Hi Kelly,
an easy way would be to split the image into independant channels and to save each channel as sequence...
I hope it would help you,
Romain

---------------------------------------------------------------
Dr. Romain Guiet
Bioimaging and Optics Platform (PT-BIOP)
Ecole Polytechnique Fédérale de Lausanne (EPFL)
Faculty of Life Sciences
Station 19, AI 0140
CH-1015 Lausanne

Phone: [+4121 69] 39629
http://biop.epfl.ch/
---------------------------------------------------------------

________________________________________
De : ImageJ Interest Group [[hidden email]] de la part de Kelly Burke [[hidden email]]
Envoyé : mardi 21 avril 2015 03:22
À : [hidden email]
Objet : Help with saving Image Sequence

I'm saving a stack file (with multiple channels and multiple z positions)
as a bunch of single images using Save As --> Image Sequence.

The default naming of the single images is "stackname_z001_c001.tif" where
the z and c correspond to the z position and channel of the specific image.

How can I make it save as "filename_c001_z001.tif" instead? I just want to
switch the order of saving the channel position and z position.

Thanks!

Kelly

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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Kelly Burke

Re: Help with saving Image Sequence

Okay, thank you, I'll try that.

On Wed, Apr 22, 2015 at 2:10 AM, Romain Guiet <[hidden email]> wrote:

> Hi Kelly,
> an easy way would be to split the image into independant channels and to
> save each channel as sequence...
> I hope it would help you,
> Romain
>
> ---------------------------------------------------------------
> Dr. Romain Guiet
> Bioimaging and Optics Platform (PT-BIOP)
> Ecole Polytechnique Fédérale de Lausanne (EPFL)
> Faculty of Life Sciences
> Station 19, AI 0140
> CH-1015 Lausanne
>
> Phone: [+4121 69] 39629
> http://biop.epfl.ch/
> ---------------------------------------------------------------
>
> ________________________________________
> De : ImageJ Interest Group [[hidden email]] de la part de Kelly
> Burke [[hidden email]]
> Envoyé : mardi 21 avril 2015 03:22
> À : [hidden email]
> Objet : Help with saving Image Sequence
>
> I'm saving a stack file (with multiple channels and multiple z positions)
> as a bunch of single images using Save As --> Image Sequence.
>
> The default naming of the single images is "stackname_z001_c001.tif" where
> the z and c correspond to the z position and channel of the specific image.
>
> How can I make it save as "filename_c001_z001.tif" instead? I just want to
> switch the order of saving the channel position and z position.
>
> Thanks!
>
> Kelly
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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