I'm relatively new to imageJ and am having a bit of trouble finding the right plugin and method for my analysis.
I have a stack of 2 channels. One channel (GFP) is used for thresholding/localising cell structures, and I want to re-use these same areas (GFP) to quantify my 2nd channel (Cy3).
Can anyone suggest a plugin and instructions that can do this for a stack?
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