How to get regional pixels from 'Analyze Particles ...'

[Md Tamjidul Hoque]

Dear All

       while using 'Analyze Particles ...' [from Analyze>Analyze Particles
...]

   Is there a way to get

         (a)  the region # and corresponding all the pixels (x, y etc)
within that region.
         (b) Is there a way to turn off the numbering on the image while
using the 'outline' option.

Or, which module to focus for modification.

- Thanks
Tamjid


On Mon, Jul 20, 2009 at 3:04 PM, Tamjid <[hidden email]> wrote:

> Dear All
>
>           I am using the plugins>particle analysis> Nucleus Counter,
> which for an image can identify Nucleus and can label different regions.
>
> If the information is sorted and accessible, I am after 'how to get the
> label numbers
> and the corresponding pixels' <x, y> [or, equivalent] within the region'.
>
> Thanks
> Tamjid
>
>
>

[Wayne Rasband]

On Jul 20, 2009, at 8:40 PM, Tamjid wrote:

> Dear All
>
>       while using 'Analyze Particles ...' [from Analyze>Analyze  
> Particles
> ...]
>
>   Is there a way to get
>
>         (a)  the region # and corresponding all the pixels (x, y etc)
> within that region.
>         (b) Is there a way to turn off the numbering on the image  
> while
> using the 'outline' option.

Use the "Masks" option and then run Process>Binary>Outline.

> Or, which module to focus for modification.

http://rsbweb.nih.gov/ij/developer/source/ij/plugin/filter/ParticleAnalyzer.java.html

-wayne

[Md Tamjidul Hoque]

Many thanks Wayne.

On Tue, Jul 21, 2009 at 11:44 AM, Wayne Rasband <[hidden email]> wrote:

> On Jul 20, 2009, at 8:40 PM, Tamjid wrote:
>
>  Dear All
>>
>>      while using 'Analyze Particles ...' [from Analyze>Analyze Particles
>> ...]
>>
>>  Is there a way to get
>>
>>        (a)  the region # and corresponding all the pixels (x, y etc)
>> within that region.
>>        (b) Is there a way to turn off the numbering on the image while
>> using the 'outline' option.
>>
>
> Use the "Masks" option and then run Process>Binary>Outline.
>
>  Or, which module to focus for modification.
>>
>
>
> http://rsbweb.nih.gov/ij/developer/source/ij/plugin/filter/ParticleAnalyzer.java.html
>
> -wayne
>