Actually, I take that back. The macro runs - however the Intensity
Correlation Analysis plugin is not taking as input the specified
Channel_1 and Channel_2.
Does anyone know how to pass specific images to the plug-in?
Thanks,
John
John Alexander wrote:
> Sorry, I figured out you can be more descriptive in passing arguments.
> The following works:
>
> run("Intensity Correlation Analysis", "Channel_1=image-red
> Channel_2=image-green Channel_Combination=[Red : Green] use=None use
> crosshair=3");
>
>
>
>
> John Alexander wrote:
>> Hi group,
>>
>> So I am writing a macro that is going to batch perform the Image
>> Correlation Analysis plugin on all open images.
>>
>> The difficulty I am having is that the dialog window asks for an image
>> for channel 1 and channel 2 and the channel combination, but apparently
>> there was no preceding underscore for the channel 2 or channel
>> combination dialog boxes, so I get a "duplicate keyword" error.
>>
>> My macro doesn't seem to work with the following:
>> run("Intensity Correlation Analysis", "channel=image-red
>> channel=image-green channel=[Red : Green] use=None use crosshair=3");
>>
>> I get image-red is not a valid choice for channel combination, which is
>> the third dialog option.
>>
>> Does that make sense?
>>
>> I need to find a work around ...
>>
>> John
>>
>
--
John K. Alexander, Ph.D.
Post-Doctoral Fellow
William Green Laboratory
University of Chicago
Dept. Neurobiology, Pharmacology, and Physiology
947 East 58th Street
Abott Hall 402
Chicago, IL 60637
(off) 773-702-9386
(fax) 773-702-3774
[hidden email]
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