ICA plugin: error - color table cannot be assigned to RGB Images

[Lucas Rudigier]

Hi all,

I encountered the following problem which might be dumb but I can't find a
way yet to make sense out of it and work around this problem. I want to use
the ICA plugin for quantifying co-localization of 2 proteins.
When I open up my images (both of them are 16 bit images) the plugin comes
up with a window saying: "color table cannot be assigned to RGB Images" -
but my pics they are not RGB the are greyscale - in some instances in
works....but I still don't figure it out what I am doing wrong here when
this message comes up.

I really appreciate the help of you guys. this would be so cool to get this
running.

best,

rudy

[Daniel James White]

Hi Lucas,

Use the Li's  ICA feature in the new Coloc_2 plugin instead.
It is actively maintained, and if there are problems we will fix them.

Coloc_2 is a bundled plugin in the Fiji distribution of ImageJ
so get it in the by default in Fiji, and remember to run the Fiji updater to get the latest version of Coloc_2.

cheers

Dan




On Oct 15, 2011, at 6:00 AM, IMAGEJ automatic digest system wrote:

> Date:    Fri, 14 Oct 2011 08:14:01 +0200
> From:    Lucas Rudigier <[hidden email]>
> Subject: ICA plugin: error - color table cannot be assigned to RGB Images
>
> Hi all,
>
> I encountered the following problem which might be dumb but I can't find a
> way yet to make sense out of it and work around this problem. I want to use
> the ICA plugin for quantifying co-localization of 2 proteins.
> When I open up my images (both of them are 16 bit images) the plugin comes
> up with a window saying: "color table cannot be assigned to RGB Images" -
> but my pics they are not RGB the are greyscale - in some instances in
> works....but I still don't figure it out what I am doing wrong here when
> this message comes up.
>
> I really appreciate the help of you guys. this would be so cool to get this
> running.
>
> best,
>
> rudy

Dr. Daniel James White BSc. (Hons.) PhD

Leader - Image Processing Facility,
Senior Microscopist,
Light Microscopy Facility.

Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
01307 DRESDEN
Germany

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