IF/ELSE and two different ROI areas

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[Volker Baecker]

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Hello,
your code works ok. The problem is the way you try to run it.
I suppose you try to run it from the macro editor. You can do this
when you have no macro definition or one macro definition in the file.
If you have multiple macro definitions the first defined macro will be
executed. So whenever you run your code from the macro editor, macro1
will be executed. Macro files with multiple macro definitions are
usually installed and the different macros can then be run from the
menu Plugins>Macros.

I guess you do not want to have macro1 and macro2 accessible from the
menu so you might want to use functions instead of macro definitions:

function loadChamberTwoROIs() {
 print("macro2")
 roiManager("Open",
"C:\\Users\\310168723\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_spots.roi");
 roiManager("Show All");
 roiManager("Select", newArray(0));
 roiManager("Measure");
}

and

function loadChamberOneRois() {
....
}

You would then replace
run("macro1");
in your if statement by the function call
loadChamberOneRois();

 Volker


[hidden email]:

> I have two types of data files. In the filename of the data file is
> mentioned whether it is chamber #1 (ch1) or chamber #2 (ch2). For
> the chambers is a different ROI area defined. I tried to make a
> macro in ImageJ; unfortunately I didn't succeed in it. Could you
> guys help me out?
>
>
> MACRO TEXT:
>
> macro "macro1" { print("macro1"); roiManager("Open",
> "C:\\Users\\310168723\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_above_PIN.roi");
>
>

\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_right_up.roi");
> roiManager("Open",
> "C:\\Users\\310168723\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_right_upper.roi");
>
>
roiManager("Open",
> "C:\\Users\\310168723\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_spots.roi");
>
>
roiManager("Show All");
> roiManager("Select", newArray(0,1,2,3)); roiManager("Measure"); }
>
> macro "macro2" { print("macro2") roiManager("Open",
> "C:\\Users\\310168723\\Documents\\ImageJ_cases\\20140710_Fluorescence\\ROI\\ROI3_spots.roi");
>
>
roiManager("Show All");

> roiManager("Select", newArray(0)); roiManager("Measure"); }
>
> chamber=substring(filename, lengthOf(filename) - 10,
> lengthOf(filename) - 7); print(chamber);
>
> if (chamber=="ch1") { run("macro1"); } else if (chamber=="ch2") {
> run("macro2"); }
>
>
>
> -- View this message in context:
> http://imagej.1557.x6.nabble.com/IF-ELSE-and-two-different-ROI-areas-tp5008862.html
>
>

Sent from the ImageJ mailing list archive at Nabble.com.
>
> -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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