Image J for MRI visualization

[Peter Iltis]

Hello,

I have multiple high-speed MRI videos (.avi), each when opened in ImageJ have some 900 individual frames tracking movements of the oral cavity structures during brass instrument performance.  At this stage, all we wish to do is to be able to track certain structures over time (moving through the layers in the stack that is created) in terms of volume changes, directions of movement, distances moved etc.  Surely someone has developed a perfect PlugIn set or some such thing for this procedure.  Can somebody point me in the correct direction??

Thank you.

Peter W. Iltis, Ph.D.
Professor of Kinesiology and Horn
Gordon College
Ken Olsen Science Center, 337
255 Grapevine Road
Wenham, MA 01984


[hidden email]<mailto:[hidden email]>
978-867-4088



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[dscho]

Hi Peter,

On Wed, 2 Oct 2013, Peter Iltis wrote:

> I have multiple high-speed MRI videos (.avi), each when opened in ImageJ
> have some 900 individual frames tracking movements of the oral cavity
> structures during brass instrument performance.  At this stage, all we
> wish to do is to be able to track certain structures over time (moving
> through the layers in the stack that is created) in terms of volume
> changes, directions of movement, distances moved etc.  Surely someone
> has developed a perfect PlugIn set or some such thing for this
> procedure.  Can somebody point me in the correct direction??

Unfortunately, MRI produces images with a wide range on the scale how easy
it is to process them. I am afraid that it is very hard to gauge without
seeing at least one example of a frame of your movie together with an
outline of your structure of interest (you would be surprised how
different a region different scientists would assume interesting in
generic biological images).

Ciao,
Johannes

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