Image5d

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Image5d

Knecht, David
I was trying to project a dataset (2 channels, 59 z steps, 6 time points) in Image5D and if I do a Max Project, it does the first 5 time points correctly, but the 6th time point is blank.  The data looks equivalent in each time point and all have the same number of slices and channels in the Image5D stack.  Any suggestions as to how to make it do all time points?  Thanks- Dave

Dr. David Knecht
Professor of Molecular and Cell Biology
Core Microscopy Facility Director
University of Connecticut
91 N. Eagleville Rd.
Storrs, CT 06269
860-486-2200


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Re: Image5d

ctrueden
Hi Dave,

Sorry for the delay in reply.

Image5D has bugs which I do not have time to fix. Do you need to use
Image5D specifically to accomplish your goals? If all you need is maximum
intensity projection, you could use the Image > Z Project... command on a
regular hyperstack.

The following macro works for me:

  newImage("HyperStack", "8-bit color-mode label", 400, 300, 2, 59, 6);
  run("Z Project...", "projection=[Max Intensity] all");

Regards,
Curtis

On Wed, Sep 30, 2015 at 4:42 PM, Knecht, David <[hidden email]>
wrote:

> I was trying to project a dataset (2 channels, 59 z steps, 6 time points)
> in Image5D and if I do a Max Project, it does the first 5 time points
> correctly, but the 6th time point is blank.  The data looks equivalent in
> each time point and all have the same number of slices and channels in the
> Image5D stack.  Any suggestions as to how to make it do all time points?
> Thanks- Dave
>
> Dr. David Knecht
> Professor of Molecular and Cell Biology
> Core Microscopy Facility Director
> University of Connecticut
> 91 N. Eagleville Rd.
> Storrs, CT 06269
> 860-486-2200
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html