ImageJ cannot open compressed DICOM

[Hanumanth]

Hi,
 
ImageJ's built in DICOM reader does not support reading of compressed
DICOMs. You have to use a plugin, such as Bio-Formats
(http://www.loci.wisc.edu/ome/formats.html).

so i have downloaded the bio-formats.jar and loci_tools.jar, how to integrate this with ImageJ tool and wht needs tobe done exactly.
 
can any one please help me
 
thanks


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[Melissa Linkert]

Hi Hanumanth,

> so i have downloaded the bio-formats.jar and loci_tools.jar, how to
> integrate this with ImageJ tool and wht needs tobe done exactly.
>

You do not need bio-formats.jar, only loci_tools.jar.  Directions for using
loci_tools.jar with ImageJ are available at
http://loci.wisc.edu/ome/formats-imagej.html.

Regards,
-Melissa

On Thu, Aug 21, 2008 at 11:24 AM, Hanumanth <[hidden email]>wrote:

> Hi,
>
> ImageJ's built in DICOM reader does not support reading of compressed
> DICOMs. You have to use a plugin, such as Bio-Formats
> (http://www.loci.wisc.edu/ome/formats.html).
>
> so i have downloaded the bio-formats.jar and loci_tools.jar, how to
> integrate this with ImageJ tool and wht needs tobe done exactly.
>
> can any one please help me
>
> thanks
>
>
>      Be the first one to try the new Messenger 9 Beta! Go to
> http://in.messenger.yahoo.com/win/
>

[Franklin Shaffer-2]

I have a file in Windows Media Video (WMV) format that I want to work with in ImageJ.
 
Is there a plugin to read WMV format?  If not is there a free software that will convert my WMV file into something that ImageJ can read, perhaps into AVI?
 
Thank you!
Frank

 
 
 
 
Frank Shaffer
Mechanical Engineer, MSME
USDOE National Energy Technology Laboratory
Computational Science Division, Model Validation Team
[hidden email]
Office phone:  [phone]
Cell phone:  [phone]

[Albert Cardona]

Franklin,

You can transcode it to a sequence of .tif files with Blender:
http://www.blender.org
Be sure to have the appropriate drivers. Th eBlender forums may help
you: http://www.blender.org/forum/

Albert

> I have a file in Windows Media Video (WMV) format that I want to work with in ImageJ.
>  
> Is there a plugin to read WMV format?  If not is there a free software that will convert my WMV file into something that ImageJ can read, perhaps into AVI?
>  
> Thank you!
> Frank
>  
--
Albert Cardona
http://www.mcdb.ucla.edu/Research/Hartenstein/acardona

[yearmore]

you don't need to convert image to other format in order to support dicom. there is a c# DICOM reading sdk, you can use to process dicom image including compression loading and annotating.