ImageJ

Inputting Tiff Channels

_‹ Previous Topic Next Topic _›

Classic

List

Threaded

14 messages Options

David Webster

Inputting Tiff Channels

I am trying to input a tiff file from Photoshop (5.5) into ImageJ 1.47m. It has 1 layer and 7 channels.
I want to get the channels. If I use ImageJ/Open I get this error:

Unsupported SamplesPerPixel: 6

I tried installing the Jimi Reader but it get this error.

java.lang.IllegalStateException: Error loading Image

What am I doing wrong, or can I even input multiple channels?

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

ctrueden

Re: Inputting Tiff Channels

Hi David,

> I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> 1.47m. It has 1 layer and 7 channels. I want to get the channels.

Did you try the File > Import > Bio-Formats command? It is available with
the Fiji distribution of ImageJ (http://fiji.sc/).

Regards,
Curtis

On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
[hidden email]> wrote:

> I am trying to input a tiff file from Photoshop (5.5) into ImageJ 1.47m.
> It has 1 layer and 7 channels.
> I want to get the channels. If I use ImageJ/Open I get this error:
>
> Unsupported SamplesPerPixel: 6
>
> I tried installing the Jimi Reader but it get this error.
>
> java.lang.IllegalStateException: Error loading Image
>
> What am I doing wrong, or can I even input multiple channels?
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

David Webster

Re: Inputting Tiff Channels

Curtis,

No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji straight
is to confusing.

Thanks - Daivd Webster

On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]> wrote:

> Hi David,
>
> > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > 1.47m. It has 1 layer and 7 channels. I want to get the channels.
>
> Did you try the File > Import > Bio-Formats command? It is available with
> the Fiji distribution of ImageJ (http://fiji.sc/).
>
> Regards,
> Curtis
>
>
> On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> [hidden email]> wrote:
>
> > I am trying to input a tiff file from Photoshop (5.5) into ImageJ 1.47m.
> > It has 1 layer and 7 channels.
> > I want to get the channels. If I use ImageJ/Open I get this error:
> >
> > Unsupported SamplesPerPixel: 6
> >
> > I tried installing the Jimi Reader but it get this error.
> >
> > java.lang.IllegalStateException: Error loading Image
> >
> > What am I doing wrong, or can I even input multiple channels?
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

Xavier Heiligenstein

Re: Inputting Tiff Channels

In reply to this post by ctrueden

Hi Curtis, it seems that you gave me the answer I was looking for while
answering David.
So thanks to both of you.
Best regards,

Xavier

Le 14/03/2013 21:06, Curtis Rueden a écrit :

> Hi David,
>
>> I am trying to input a tiff file from Photoshop (5.5) into ImageJ
>> 1.47m. It has 1 layer and 7 channels. I want to get the channels.
> Did you try the File > Import > Bio-Formats command? It is available with
> the Fiji distribution of ImageJ (http://fiji.sc/).
>
> Regards,
> Curtis
>
>
> On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> [hidden email]> wrote:
>
>> I am trying to input a tiff file from Photoshop (5.5) into ImageJ 1.47m.
>> It has 1 layer and 7 channels.
>> I want to get the channels. If I use ImageJ/Open I get this error:
>>
>> Unsupported SamplesPerPixel: 6
>>
>> I tried installing the Jimi Reader but it get this error.
>>
>> java.lang.IllegalStateException: Error loading Image
>>
>> What am I doing wrong, or can I even input multiple channels?
>>
>> --
>> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

ctrueden

Re: Inputting Tiff Channels

In reply to this post by David Webster

Hi David,

> No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> straight is to confusing.

You can install Bio-Formats into vanilla ImageJ by following the directions
at:

https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/

But personally I think it is much easier to just use Fiji.

Regards,
Curtis

On Thu, Mar 14, 2013 at 4:03 PM, David Webster <[hidden email]>wrote:

> Curtis,
>
> No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji straight
> is to confusing.
>
> Thanks - Daivd Webster
>
> On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]> wrote:
>
> > Hi David,
> >
> > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > 1.47m. It has 1 layer and 7 channels. I want to get the channels.
> >
> > Did you try the File > Import > Bio-Formats command? It is available with
> > the Fiji distribution of ImageJ (http://fiji.sc/).
> >
> > Regards,
> > Curtis
> >
> >
> > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> > [hidden email]> wrote:
> >
> > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> 1.47m.
> > > It has 1 layer and 7 channels.
> > > I want to get the channels. If I use ImageJ/Open I get this error:
> > >
> > > Unsupported SamplesPerPixel: 6
> > >
> > > I tried installing the Jimi Reader but it get this error.
> > >
> > > java.lang.IllegalStateException: Error loading Image
> > >
> > > What am I doing wrong, or can I even input multiple channels?
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

dscho

Re: Inputting Tiff Channels

In reply to this post by David Webster

Hi David,

On Thu, 14 Mar 2013, David Webster wrote:

> No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> straight is to confusing.

Hehe, good one! Especially given that the name "Fiji" stands for the
acronym "Fiji Is Just ImageJ" ;-)

You made my day!
Johannes

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

David Webster

Re: Inputting Tiff Channels

In reply to this post by ctrueden

Thanks. That seems to work although I don't seem to be getting all of the
layers/channels. Perhaps it doesn't read the RGB channel separately.

David Webster

On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <[hidden email]> wrote:

> Hi David,
>
> > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > straight is to confusing.
>
> You can install Bio-Formats into vanilla ImageJ by following the directions
> at:
>
> https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
>
> But personally I think it is much easier to just use Fiji.
>
> Regards,
> Curtis
>
>
> On Thu, Mar 14, 2013 at 4:03 PM, David Webster <[hidden email]
> >wrote:
>
> > Curtis,
> >
> > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> straight
> > is to confusing.
> >
> > Thanks - Daivd Webster
> >
> > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]>
> wrote:
> >
> > > Hi David,
> > >
> > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > > 1.47m. It has 1 layer and 7 channels. I want to get the channels.
> > >
> > > Did you try the File > Import > Bio-Formats command? It is available
> with
> > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > >
> > > Regards,
> > > Curtis
> > >
> > >
> > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> > > [hidden email]> wrote:
> > >
> > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > 1.47m.
> > > > It has 1 layer and 7 channels.
> > > > I want to get the channels. If I use ImageJ/Open I get this error:
> > > >
> > > > Unsupported SamplesPerPixel: 6
> > > >
> > > > I tried installing the Jimi Reader but it get this error.
> > > >
> > > > java.lang.IllegalStateException: Error loading Image
> > > >
> > > > What am I doing wrong, or can I even input multiple channels?
> > > >
> > > > --
> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > >
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

dscho

Re: Inputting Tiff Channels

In reply to this post by dscho

Hi David,

On Thu, 14 Mar 2013, David Webster wrote:

> Well, I don't need the batteries, and since they are the same, why not
> just use ImageJ.

Oh, sorry, I thought you were ironic, given that you asked for extra
functionality that is not in vanilla ImageJ at all, and requires something
that makes ImageJ so powerful: a plugin.

My bad,
Johannes

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

ctrueden

Re: Inputting Tiff Channels

In reply to this post by David Webster

Hi David,

> That seems to work although I don't seem to be getting all of the
> layers/channels. Perhaps it doesn't read the RGB channel separately.

If you think this is a bug, could you please report it on the ome-users
list [1] and submit a sample non-working dataset using the OME upload
mechanism [2]?

Thanks,
Curtis

[1] http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/
[2] http://qa.openmicroscopy.org.uk/

On Thu, Mar 14, 2013 at 10:39 PM, David Webster <[hidden email]>wrote:

> Thanks. That seems to work although I don't seem to be getting all of the
> layers/channels. Perhaps it doesn't read the RGB channel separately.
>
> David Webster
>
> On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <[hidden email]> wrote:
>
> > Hi David,
> >
> > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > > straight is to confusing.
> >
> > You can install Bio-Formats into vanilla ImageJ by following the
> directions
> > at:
> >
> > https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
> >
> > But personally I think it is much easier to just use Fiji.
> >
> > Regards,
> > Curtis
> >
> >
> > On Thu, Mar 14, 2013 at 4:03 PM, David Webster <[hidden email]
> > >wrote:
> >
> > > Curtis,
> > >
> > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > straight
> > > is to confusing.
> > >
> > > Thanks - Daivd Webster
> > >
> > > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]>
> > wrote:
> > >
> > > > Hi David,
> > > >
> > > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > > > 1.47m. It has 1 layer and 7 channels. I want to get the channels.
> > > >
> > > > Did you try the File > Import > Bio-Formats command? It is available
> > with
> > > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > > >
> > > > Regards,
> > > > Curtis
> > > >
> > > >
> > > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> > > > [hidden email]> wrote:
> > > >
> > > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > 1.47m.
> > > > > It has 1 layer and 7 channels.
> > > > > I want to get the channels. If I use ImageJ/Open I get this error:
> > > > >
> > > > > Unsupported SamplesPerPixel: 6
> > > > >
> > > > > I tried installing the Jimi Reader but it get this error.
> > > > >
> > > > > java.lang.IllegalStateException: Error loading Image
> > > > >
> > > > > What am I doing wrong, or can I even input multiple channels?
> > > > >
> > > > > --
> > > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > > >
> > > >
> > > > --
> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > >
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

David Webster

Re: Inputting Tiff Channels

Curtis,

I don't know if it is a bug as I don't know how tiff (Photoshop) files are
actually stored. It appears to me that what is getting stored is all that
is needed to reconstruct the actual image data. That is, if you have
separate R,G,and B channels, then you should be able to form the combined
RGB channel. So, does tiff and/or photoshop store this channel separately?

David

On Fri, Mar 15, 2013 at 1:30 PM, Curtis Rueden <[hidden email]> wrote:

> Hi David,
>
> > That seems to work although I don't seem to be getting all of the
> > layers/channels. Perhaps it doesn't read the RGB channel separately.
>
> If you think this is a bug, could you please report it on the ome-users
> list [1] and submit a sample non-working dataset using the OME upload
> mechanism [2]?
>
> Thanks,
> Curtis
>
> [1] http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/
> [2] http://qa.openmicroscopy.org.uk/
>
>
> On Thu, Mar 14, 2013 at 10:39 PM, David Webster <[hidden email]
> >wrote:
>
> > Thanks. That seems to work although I don't seem to be getting all of the
> > layers/channels. Perhaps it doesn't read the RGB channel separately.
> >
> > David Webster
> >
> > On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <[hidden email]>
> wrote:
> >
> > > Hi David,
> > >
> > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > > > straight is to confusing.
> > >
> > > You can install Bio-Formats into vanilla ImageJ by following the
> > directions
> > > at:
> > >
> > > https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
> > >
> > > But personally I think it is much easier to just use Fiji.
> > >
> > > Regards,
> > > Curtis
> > >
> > >
> > > On Thu, Mar 14, 2013 at 4:03 PM, David Webster <[hidden email]
> > > >wrote:
> > >
> > > > Curtis,
> > > >
> > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > > straight
> > > > is to confusing.
> > > >
> > > > Thanks - Daivd Webster
> > > >
> > > > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]>
> > > wrote:
> > > >
> > > > > Hi David,
> > > > >
> > > > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > > > > 1.47m. It has 1 layer and 7 channels. I want to get the channels.
> > > > >
> > > > > Did you try the File > Import > Bio-Formats command? It is
> available
> > > with
> > > > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > > > >
> > > > > Regards,
> > > > > Curtis
> > > > >
> > > > >
> > > > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> > > > > [hidden email]> wrote:
> > > > >
> > > > > > I am trying to input a tiff file from Photoshop (5.5) into ImageJ
> > > > 1.47m.
> > > > > > It has 1 layer and 7 channels.
> > > > > > I want to get the channels. If I use ImageJ/Open I get this
> error:
> > > > > >
> > > > > > Unsupported SamplesPerPixel: 6
> > > > > >
> > > > > > I tried installing the Jimi Reader but it get this error.
> > > > > >
> > > > > > java.lang.IllegalStateException: Error loading Image
> > > > > >
> > > > > > What am I doing wrong, or can I even input multiple channels?
> > > > > >
> > > > > > --
> > > > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > > > >
> > > > >
> > > > > --
> > > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > > >
> > > >
> > > > --
> > > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > > >
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

David Webster

Re: Inputting Tiff Channels

In reply to this post by ctrueden

Curtis,

I tried sending a description and example as per your suggestion. Doj't
know if they got it.

On Fri, Mar 15, 2013 at 1:30 PM, Curtis Rueden <[hidden email]> wrote:

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

ctrueden

Re: Inputting Tiff Channels

Hi David,

> I tried sending a description and example as per your suggestion.
> Doj't know if they got it.

Thanks. I did not see a message from you on the ome-users list though, so I
am cross-posting this reply there to inform the OME team.

Regards,
Curtis

On Fri, Mar 15, 2013 at 8:11 PM, David Webster <[hidden email]>wrote:

> Curtis,
>
> I tried sending a description and example as per your suggestion. Doj't
> know if they got it.
>
> On Fri, Mar 15, 2013 at 1:30 PM, Curtis Rueden <[hidden email]> wrote:
> > Hi David,
> >
> > > That seems to work although I don't seem to be getting all of the
> > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> >
> > If you think this is a bug, could you please report it on the ome-users
> > list [1] and submit a sample non-working dataset using the OME upload
> > mechanism [2]?
> >
> > Thanks,
> > Curtis
> >
> > [1] http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/
> > [2] http://qa.openmicroscopy.org.uk/
> >
> > On Thu, Mar 14, 2013 at 10:39 PM, David Webster <[hidden email]
> > wrote:
> > > Thanks. That seems to work although I don't seem to be getting all of
> the
> > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> > >
> > > David Webster
> > >
> > > On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <[hidden email]
> > wrote:
> > > > Hi David,
> > > >
> > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and Fiji
> > > > > straight is to confusing.
> > > >
> > > > You can install Bio-Formats into vanilla ImageJ by following
> the directions
> > > > at:
> > > >
> > > >
> https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
> > > >
> > > > But personally I think it is much easier to just use Fiji.
> > > >
> > > > Regards,
> > > > Curtis
> > > >
> > > > On Thu, Mar 14, 2013 at 4:03 PM, David Webster <
> [hidden email] wrote:
> > > > > Curtis,
> > > > >
> > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and
> Fiji straight
> > > > > is to confusing.
> > > > >
> > > > > Thanks - Daivd Webster
> > > > >
> > > > > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <[hidden email]
> > wrote:
> > > > > > Hi David,
> > > > > >
> > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> ImageJ
> > > > > > > 1.47m. It has 1 layer and 7 channels. I want to get the
> channels.
> > > > > >
> > > > > > Did you try the File > Import > Bio-Formats command? It
> is available with
> > > > > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > > > > >
> > > > > > Regards,
> > > > > > Curtis
> > > > > >
> > > > > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> [hidden email]> wrote:
> > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> ImageJ 1.47m.
> > > > > > > It has 1 layer and 7 channels.
> > > > > > > I want to get the channels. If I use ImageJ/Open I get
> this error:
> > > > > > >
> > > > > > > Unsupported SamplesPerPixel: 6
> > > > > > >
> > > > > > > I tried installing the Jimi Reader but it get this error.
> > > > > > >
> > > > > > > java.lang.IllegalStateException: Error loading Image
> > > > > > >
> > > > > > > What am I doing wrong, or can I even input multiple channels?
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

David Webster

Re: Inputting Tiff Channels

Thanks.This is probably just a case of Photoshop using a later version of
Tif, but it doesn't hurt to check.

On Mon, Mar 18, 2013 at 8:03 PM, Curtis Rueden <[hidden email]> wrote:

> Hi David,
>
> > I tried sending a description and example as per your suggestion.
> > Doj't know if they got it.
>
> Thanks. I did not see a message from you on the ome-users list though, so I
> am cross-posting this reply there to inform the OME team.
>
> Regards,
> Curtis
>
>
> On Fri, Mar 15, 2013 at 8:11 PM, David Webster <[hidden email]
> >wrote:
>
> > Curtis,
> >
> > I tried sending a description and example as per your suggestion. Doj't
> > know if they got it.
> >
> > On Fri, Mar 15, 2013 at 1:30 PM, Curtis Rueden <[hidden email]>
> wrote:
> > > Hi David,
> > >
> > > > That seems to work although I don't seem to be getting all of the
> > > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> > >
> > > If you think this is a bug, could you please report it on the ome-users
> > > list [1] and submit a sample non-working dataset using the OME upload
> > > mechanism [2]?
> > >
> > > Thanks,
> > > Curtis
> > >
> > > [1] http://lists.openmicroscopy.org.uk/mailman/listinfo/ome-users/
> > > [2] http://qa.openmicroscopy.org.uk/
> > >
> > > On Thu, Mar 14, 2013 at 10:39 PM, David Webster <[hidden email]
> > > wrote:
> > > > Thanks. That seems to work although I don't seem to be getting all of
> > the
> > > > layers/channels. Perhaps it doesn't read the RGB channel separately.
> > > >
> > > > David Webster
> > > >
> > > > On Thu, Mar 14, 2013 at 2:37 PM, Curtis Rueden <[hidden email]
> > > wrote:
> > > > > Hi David,
> > > > >
> > > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and
> Fiji
> > > > > > straight is to confusing.
> > > > >
> > > > > You can install Bio-Formats into vanilla ImageJ by following
> > the directions
> > > > > at:
> > > > >
> > > > >
> > https://www.openmicroscopy.org/site/support/bio-formats/users/imagej/
> > > > >
> > > > > But personally I think it is much easier to just use Fiji.
> > > > >
> > > > > Regards,
> > > > > Curtis
> > > > >
> > > > > On Thu, Mar 14, 2013 at 4:03 PM, David Webster <
> > [hidden email] wrote:
> > > > > > Curtis,
> > > > > >
> > > > > > No! I tend to just use the vanilla imageJ. Keeping ImageJ and
> > Fiji straight
> > > > > > is to confusing.
> > > > > >
> > > > > > Thanks - Daivd Webster
> > > > > >
> > > > > > On Thu, Mar 14, 2013 at 1:06 PM, Curtis Rueden <
> [hidden email]
> > > wrote:
> > > > > > > Hi David,
> > > > > > >
> > > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> > ImageJ
> > > > > > > > 1.47m. It has 1 layer and 7 channels. I want to get the
> > channels.
> > > > > > >
> > > > > > > Did you try the File > Import > Bio-Formats command? It
> > is available with
> > > > > > > the Fiji distribution of ImageJ (http://fiji.sc/).
> > > > > > >
> > > > > > > Regards,
> > > > > > > Curtis
> > > > > > >
> > > > > > > On Thu, Mar 14, 2013 at 3:01 PM, David William Webster <
> > [hidden email]> wrote:
> > > > > > > > I am trying to input a tiff file from Photoshop (5.5) into
> > ImageJ 1.47m.
> > > > > > > > It has 1 layer and 7 channels.
> > > > > > > > I want to get the channels. If I use ImageJ/Open I get
> > this error:
> > > > > > > >
> > > > > > > > Unsupported SamplesPerPixel: 6
> > > > > > > >
> > > > > > > > I tried installing the Jimi Reader but it get this error.
> > > > > > > >
> > > > > > > > java.lang.IllegalStateException: Error loading Image
> > > > > > > >
> > > > > > > > What am I doing wrong, or can I even input multiple channels?
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

dscho

Re: Inputting Tiff Channels

Hi David,

On Mon, 18 Mar 2013, David Webster wrote:

> Thanks.This is probably just a case of Photoshop using a later version
> of Tif, but it doesn't hurt to check.

TIFF is actually a container format. So it is not likely that Photoshop
uses a later version of Tif, but it is more likely that they use a
different codec and/or (non-standard) convention to put metadata into the
TIFF sections.

TIFF is not really one format. It is many formats.

Ciao,
Johannes

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html