Jython: close plugin dialog box in a loop

[kungphil]

I am trying to close a dialog box when using looping through a directory.  I have a Python background and therefore am using Jython.  The dialog box appears when using the TurboReg plugin asking whether I would like to save the image and measurement results - I don't and just want to continue looping!

I have tried to recreate this but am still a novice with ImageJ and Jython, so here is an outline (note: this snippet calls functions I have not posted)...

from ij import IJ
w = WindowManager

# dictionary of variables
d = {"t":target.path_to_image, "tCropRight":target.width-1, "tCropBottom":target.height-1, "s":source.path_to_image, "sCropRight":source.width-1, "sCropBottom":source.height-1}

# run TurboReg dialog
IJ.run("TurboReg ", "-align \
                -file %(s)s 0 0 %(sCropRight)s %(sCropBottom)s \
                -file %(t)s 0 0 %(tCropRight)s %(tCropBottom)s \
                -bilinear \
                1131 847  \
                1595 1198 \
                1131 4636 \
                1595 6561 \
                6188 847  \
                8732 1198 \
                6188 4636 \
                8732 6561 \
                -hideOutput" % d)


w.setCurrentWindow(w.getWindow("Output")) # select output window
IJ.run("Stack to Images") # stack to images
w.setCurrentWindow(w.getWindow("Data")) # select data window
IJ.run("16-bit") # convert to 16 bit
IJ.saveAs("Tiff", temp_nir) # save image
### CLOSE DIALOG BOXES! ###

Thanks

[kungphil]

I have figured out my own problem! The dialog is called "Results", so:

from ij import IJ
w = WindowManager

win = w.getWindow("Results")
win.removeNotify()

This closes dialog without asking whether saving is required.

[ctrueden]

Hi kungphil,

I see that you already asked and answered your own question on
StackOverflow:
http://stackoverflow.com/questions/19017986/fiji-and-jython-closing-or-suppressing-a-plugin-dialog-box

I reply here for the mailing list archives.

Regards,
Curtis


On Wed, Sep 25, 2013 at 7:48 PM, kungphil <[hidden email]>wrote:

> I am trying to close a dialog box when using looping through a directory.
>  I
> have a Python background and therefore am using Jython.  The dialog box
> appears when using the TurboReg plugin asking whether I would like to save
> the image and measurement results - I don't and just want to continue
> looping!
>
> I have tried to recreate this but am still a novice with ImageJ and Jython,
> so here is an outline (note: this snippet calls functions I have not
> posted)...
>
> from ij import IJ
> w = WindowManager
>
> # dictionary of variables
> d = {"t":target.path_to_image, "tCropRight":target.width-1,
> "tCropBottom":target.height-1, "s":source.path_to_image,
> "sCropRight":source.width-1, "sCropBottom":source.height-1}
>
> # run TurboReg dialog
> IJ.run("TurboReg ", "-align \
>                 -file %(s)s 0 0 %(sCropRight)s %(sCropBottom)s \
>                 -file %(t)s 0 0 %(tCropRight)s %(tCropBottom)s \
>                 -bilinear \
>                 1131 847  \
>                 1595 1198 \
>                 1131 4636 \
>                 1595 6561 \
>                 6188 847  \
>                 8732 1198 \
>                 6188 4636 \
>                 8732 6561 \
>                 -hideOutput" % d)
>
>
> w.setCurrentWindow(w.getWindow("Output")) # select output window
> IJ.run("Stack to Images") # stack to images
> w.setCurrentWindow(w.getWindow("Data")) # select data window
> IJ.run("16-bit") # convert to 16 bit
> IJ.saveAs("Tiff", temp_nir) # save image
> ### CLOSE DIALOG BOXES! ###
>
> Thanks
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Jython-close-plugin-dialog-box-in-a-loop-tp5004943.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html