Dear Grace,
I looked at your file with an hex editor, but this lsm file you sent is
corrupted and contains no pixel data. Something must be wrong with your
software saving as *.lsm files. You should try and go back to the
microscope, and save from the original files again.
Sincerely,
Jerome
On 3 March 2014 15:10, Grace Chongloi <
[hidden email]> wrote:
> Hi Jerome,
> This is one the files that I have , its not a stack but even with
> this file it opens sometimes and then in a the next min it says the file
> format is not supported or pixels is null.
> Hope you can help me figure out the problem
>
> best,
> Grace
>
>
> On Mon, Mar 3, 2014 at 7:19 PM, Jerome Mutterer-3 [via ImageJ] <
>
[hidden email]> wrote:
>
> > Dear Grace,
> > could you please share one of your lsm files, so that the error can be
> > fixed ?
> > Thank you.
> > Jerome
> >
> >
> >
> > On 3 March 2014 13:27, Grace Chongloi <[hidden email]<
>
http://user/SendEmail.jtp?type=node&node=5006743&i=0>>
> > wrote:
> >
> > > Hi all,
> > > I have been using ImageJ for about a year now. I have confocal
> > images
> > > in
> > > .lsm format, I've been able to open the .lsm files earlier but recently
> > I
> > > have had a major problem in opening the files. I have updated ImageJ
> and
> > > the
> > > lsm reader. but the log reads ' input/out error'. I also get an
> > exception
> > > msg reading that 'pixels is null' . I have tried downloading the
> > bioformats
> > > package too. Again i get an 'i/o error'
> > > Iam not very familiar with java
> > > Please help.. Iam at my wits end!!!!
> > > Many thanks!!
> > > Grace C
> > >
> > >
> > >
> > > --
> > > View this message in context:
> > >
http://imagej.1557.x6.nabble.com/LSM-reader-issue-tp5006740.html> > > Sent from the ImageJ mailing list archive at Nabble.com.
> > >
> > > --
> > > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> > >
> >
> >
> >
> > --
> > Jerome Mutterer
> > CNRS - Institut de biologie moléculaire des plantes
> > 12, rue du Général Zimmer
> > 67084 Strasbourg Cedex
> > T 0367155339
> > www.ibmp.cnrs.fr
> >
> > --
> > ImageJ mailing list:
http://imagej.nih.gov/ij/list.html> >
> >
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>
> > .
> > NAML<
> http://imagej.1557.x6.nabble.com/template/NamlServlet.jtp?macro=macro_viewer&id=instant_html%21nabble%3Aemail.naml&base=nabble.naml.namespaces.BasicNamespace-nabble.view.web.template.NabbleNamespace-nabble.view.web.template.NodeNamespace&breadcrumbs=notify_subscribers%21nabble%3Aemail.naml-instant_emails%21nabble%3Aemail.naml-send_instant_email%21nabble%3Aemail.naml> >
> >
>
>
> 3.lsm (5M) <
http://imagej.1557.x6.nabble.com/attachment/5006744/0/3.lsm>
>
>
>
>
> --
> View this message in context:
>
http://imagej.1557.x6.nabble.com/LSM-reader-issue-tp5006740p5006744.html> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list:
http://imagej.nih.gov/ij/list.html>
--
Jerome Mutterer
CNRS - Institut de biologie moléculaire des plantes
12, rue du Général Zimmer
67084 Strasbourg Cedex
T 0367155339
www.ibmp.cnrs.fr
--
ImageJ mailing list:
http://imagej.nih.gov/ij/list.html
Locked
3.lsm (5M)