MRI: Plugins, Tips and Data

[McAuley, Grant (LLU)]

I am a graduate student interested in MRI post-processing.  I am new
both to this area and ImageJ, but am an experienced Java programmer.  I
am wondering:

1) What kinds of MRI processing have people done with ImageJ, and what
kinds of things are possible?
2) What plugins might I need/try?
3) Where might I find some sample MRI data?

Any info, tips or links would be appreciated.

[Dianne Patterson]

For what it's worth, we use the read and write analyze plugin...we have used
ImageJ for manual skull stripping and identifying white matter
hyperintensities.

-Dianne

Dianne K. Patterson Ph.D.
Psychology, Room 217E
[phone]
Cognition and NeuroImaging Labs
University of Arizona
Tucson, AZ


Quoting "McAuley, Grant (LLU)" <[hidden email]>:

> I am a graduate student interested in MRI post-processing.  I am new
> both to this area and ImageJ, but am an experienced Java programmer.  I
> am wondering:
>
> 1) What kinds of MRI processing have people done with ImageJ, and what
> kinds of things are possible?
> 2) What plugins might I need/try?
> 3) Where might I find some sample MRI data?
>
> Any info, tips or links would be appreciated.

[Anita Ramani]

Dianne,
How do you use ImageJ for manual skull stripping?  We usually trace around
the image and do...Edit..."Clear Outside".  Please elaborate on how you use
ImageJ for identifying white matter hyperintensities.
Thanks,
Anita


-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]]On Behalf Of Dianne
Patterson
Sent: Monday, August 22, 2005 1:00 PM
To: [hidden email]
Subject: Re: MRI: Plugins, Tips and Data

For what it's worth, we use the read and write analyze plugin...we have used
ImageJ for manual skull stripping and identifying white matter
hyperintensities.

-Dianne

Dianne K. Patterson Ph.D.
Psychology, Room 217E
[phone]
Cognition and NeuroImaging Labs
University of Arizona
Tucson, AZ


Quoting "McAuley, Grant (LLU)" <[hidden email]>:

> I am a graduate student interested in MRI post-processing.  I am new
> both to this area and ImageJ, but am an experienced Java programmer.  I
> am wondering:
>
> 1) What kinds of MRI processing have people done with ImageJ, and what
> kinds of things are possible?
> 2) What plugins might I need/try?
> 3) Where might I find some sample MRI data?
>
> Any info, tips or links would be appreciated.

[Dianne Patterson]

You described it perfectly.

-D

Dianne K. Patterson Ph.D.
Psychology, Room 217E
[phone]
Cognition and NeuroImaging Labs
University of Arizona
Tucson, AZ


Quoting Anita Ramani <[hidden email]>:

> Dianne,
> How do you use ImageJ for manual skull stripping?  We usually trace around
> the image and do...Edit..."Clear Outside".  Please elaborate on how you use
> ImageJ for identifying white matter hyperintensities.
> Thanks,
> Anita
>
>
> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]]On Behalf Of Dianne
> Patterson
> Sent: Monday, August 22, 2005 1:00 PM
> To: [hidden email]
> Subject: Re: MRI: Plugins, Tips and Data
>
> For what it's worth, we use the read and write analyze plugin...we have used
> ImageJ for manual skull stripping and identifying white matter
> hyperintensities.
>
> -Dianne
>
> Dianne K. Patterson Ph.D.
> Psychology, Room 217E
> [phone]
> Cognition and NeuroImaging Labs
> University of Arizona
> Tucson, AZ
>
>
> Quoting "McAuley, Grant (LLU)" <[hidden email]>:
>
>> I am a graduate student interested in MRI post-processing.  I am new
>> both to this area and ImageJ, but am an experienced Java programmer.  I
>> am wondering:
>>
>> 1) What kinds of MRI processing have people done with ImageJ, and what
>> kinds of things are possible?
>> 2) What plugins might I need/try?
>> 3) Where might I find some sample MRI data?
>>
>> Any info, tips or links would be appreciated.