MacOSX 10.5.5 ImageJ 1.42a, "File>Save As>Image Sequence..." fails to save images?

[M.M.]

I have attempted to save images in a stack as a seuqence using the "File>Save As>Image Sequence...", however, although processing appears to occur, images are not saved. I have tried using 64bit ImageJ and ImageJ running on MacOSX 10.5.5 with no sucess. I have also attempted to use diffrent image format within the "File>Save As>Image Sequence..." with no sucess. A search of my hard drive failed to find the appropriatelly named files suggesting the images are not saved in another directory. In addition, normal saving of a single slice stack works. Could someone ssuggest a solution?

Running

MacOSX 10.5.5
4GB Ram

[Harry Parker]

I just upgraded to IJ 1.42a and tried this on my Mac with 1 GB RAM with no problems.

    Mac OS X 10.5.5 and Java 1.5.0_16.

I just opened File -> Open Samples -> MRI Stack, and saved the 8 bit stack as TIFF's.
Can you do that?
If so, what kind of images do you have and what format were you trying to save?

 
--
Harry Parker
Senior Imaging Systems Engineer
Digital Imaging Systems, Inc.



----- Original Message ----
From: M.M. <[hidden email]>
To: [hidden email]
Sent: Sunday, November 9, 2008 10:30:11 AM
Subject: MacOSX 10.5.5 ImageJ 1.42a, "File>Save As>Image Sequence..." fails to save images?

I have attempted to save images in a stack as a seuqence using the "File>Save
As>Image Sequence...", however, although processing appears to occur, images
are not saved. I have tried using 64bit ImageJ and ImageJ running on MacOSX
10.5.5 with no sucess. I have also attempted to use diffrent image format
within the "File>Save As>Image Sequence..." with no sucess. A search of my
hard drive failed to find the appropriatelly named files suggesting the
images are not saved in another directory. In addition, normal saving of a
single slice stack works. Could someone ssuggest a solution?

Running

MacOSX 10.5.5
4GB Ram

--
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[M.M.]

Harry Parker (via Nabble) wrote:

I just upgraded to IJ 1.42a and tried this on my Mac with 1 GB RAM with no problems.

    Mac OS X 10.5.5 and Java 1.5.0_16.

I just opened File -> Open Samples -> MRI Stack, and saved the 8 bit stack as TIFF's.
Can you do that?
If so, what kind of images do you have and what format were you trying to save?

 
--
Harry Parker
Senior Imaging Systems Engineer
Digital Imaging Systems, Inc.



----- Original Message ----
From: M.M. <prof.matic@...>
To: IMAGEJ@...
Sent: Sunday, November 9, 2008 10:30:11 AM
Subject: MacOSX 10.5.5 ImageJ 1.42a, "File>Save As>Image Sequence..." fails to save images?

I have attempted to save images in a stack as a seuqence using the "File>Save
As>Image Sequence...", however, although processing appears to occur, images
are not saved. I have tried using 64bit ImageJ and ImageJ running on MacOSX
10.5.5 with no sucess. I have also attempted to use diffrent image format
within the "File>Save As>Image Sequence..." with no sucess. A search of my
hard drive failed to find the appropriatelly named files suggesting the
images are not saved in another directory. In addition, normal saving of a
single slice stack works. Could someone ssuggest a solution?

Running

MacOSX 10.5.5
4GB Ram

--
View this message in context: http://n2.nabble.com/MacOSX-10.5.5-ImageJ-1.42a%2C-%22File%3ESave-As%3EImage-Sequence...%22-fails-to-save-images--tp1477509p1477509.html
Sent from the ImageJ mailing list archive at Nabble.com.



     

---

This email is a reply to your post @ http://n2.nabble.com/MacOSX-10.5.5-ImageJ-1.42a%2C-%22File%3ESave-As%3EImage-Sequence...%22-fails-to-save-images--tp1477509p1478579.html
You can reply by email or by visting the link above.

I cannot reproduce the MRI stack to image sequence. Again, the files do not show up.

[Harry Parker]

Does your ImageJ exhibit any other unusual behavior?
Which version of Java do you have installed?
One thing to try: Turn on debug mode (in Edit->Options->Misc...), then open the MRI stack as before and try saving the image sequence to your desktop. Save your log file and compare it to the one I'm enclosing. Maybe something will then be obvious to you.

 
--
Harry Parker
Senior Imaging Systems Engineer
Digital Imaging Systems, Inc.



----- Original Message ----
From: M.M. <[hidden email]>
To: [hidden email]
Sent: Sunday, November 9, 2008 10:20:47 PM
Subject: Re: MacOSX 10.5.5 ImageJ 1.42a, "File>Save As>Image Sequence..." fails to save images?

Harry Parker (via Nabble) wrote:

> I just upgraded to IJ 1.42a and tried this on my Mac with 1 GB RAM
> with no problems.
>
>     Mac OS X 10.5.5 and Java 1.5.0_16.
>
> I just opened File -> Open Samples -> MRI Stack, and saved the 8 bit
> stack as TIFF's.
> Can you do that?
> If so, what kind of images do you have and what format were you trying
> to save?
>
>  
> --
> Harry Parker
> Senior Imaging Systems Engineer
> Digital Imaging Systems, Inc.
>
>
>
> ----- Original Message ----
> From: M.M. <prof.matic@...
> <http://n2.nabble.com/user/SendEmail.jtp?type=node&node=1478579&i=0>>
> To: IMAGEJ@...
> <http://n2.nabble.com/user/SendEmail.jtp?type=node&node=1478579&i=1>
> Sent: Sunday, November 9, 2008 10:30:11 AM
> Subject: MacOSX 10.5.5 ImageJ 1.42a, "File>Save As>Image Sequence..."
> fails to save images?
>
> I have attempted to save images in a stack as a seuqence using the
> "File>Save
> As>Image Sequence...", however, although processing appears to occur,
> images
> are not saved. I have tried using 64bit ImageJ and ImageJ running on
> MacOSX
> 10.5.5 with no sucess. I have also attempted to use diffrent image format
> within the "File>Save As>Image Sequence..." with no sucess. A search
> of my
> hard drive failed to find the appropriatelly named files suggesting the
> images are not saved in another directory. In addition, normal saving
> of a
> single slice stack works. Could someone ssuggest a solution?
>
> Running
>
> MacOSX 10.5.5
> 4GB Ram
>
> --
> View this message in context:
> http://n2.nabble.com/MacOSX-10.5.5-ImageJ-1.42a%2C-%22File%3ESave-As%3EImage-Sequence...%22-fails-to-save-images--tp1477509p1477509.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
>
>
>      
>
>
> ------------------------------------------------------------------------
> This email is a reply to your post @
> http://n2.nabble.com/MacOSX-10.5.5-ImageJ-1.42a%2C-%22File%3ESave-As%3EImage-Sequence...%22-fails-to-save-images--tp1477509p1478579.html
> You can reply by email or by visting the link above.
>

I cannot reproduce the MRI stack to image sequence. Again, the files do

not show up.

--
View this message in context: http://n2.nabble.com/MacOSX-10.5.5-ImageJ-1.42a%2C-%22File%3ESave-As%3EImage-Sequence...%22-fails-to-save-images--tp1477509p1479231.html
Sent from the ImageJ mailing list archive at Nabble.com.