Dear ImageJ-listers and experts!
The first two macros of the "Easy"-series for special image analyses are ready for download... Both rely on ImageJ-plugins of mine that are already available for free since several years. The "Easy"-macros however, avoid the struggle with the complexity of many parameters that normally need to be well-chosen and that must be properly understood. 1. "Easy Orientation" (core plugin: "Slice Integrals") --------------------- Download from: <https://www.gluender.de/Miscellanea/MiscTexts/UtilitiesText.html#Gl-2019-2> From the ReadMe-doc: <https://www.gluender.de/Miscellanea/MiscTexts/MiscExcerpts/ReadMe_EO.html> -- "Easy Orientation" is a “Macro Tool Set” for “ImageJ” that consists of two “Action Tools”, namely "Easy Orientation Analysis" performing global “Power Spectrum”-based orientation analyses of up to seven, optionally highpass-filtered images, and "Orientation Highpass Test" performing such analyses on a single image that is filtered by seven pre-defined highpasses. -- Easy Orientation does not work with image-stacks. The development of "Easy Orientation" was motivated by several requests for simple orientation analyses. Global “Power Spectrum”-based orientation analyses by the macro tool "Easy Orientation Analysis" show very good performance and the commonly required pre-processing (windowing and DC-removal) is already included. Furthermore, the crucial highpass-setting, that most often is neglected, is eased by the companion tool "Orientation Highpass Test". In short, the macro tool set "Easy Orientation" allows for high quality global orientation analyses and its operation is easy. 1. "Easy Focus" (core plugin: "Focus_LP") --------------- Download from: <https://www.gluender.de/Miscellanea/MiscTexts/UtilitiesText.html#Gl-2019-3> From the ReadMe-doc: <https://www.gluender.de/Miscellanea/MiscTexts/MiscExcerpts/ReadMe_EF.html> -- "Easy Focus" returns the best focused slice of a stack that represents a focus series. The stack can contain a single focus series or a temporal sequence of focus series (4D-hyperstack). -- "Easy Focus" requires stacks of square-sized image-support or selection (ROI), with a power of two side length, i.e. for example 64, 128, 256, etc. -- "Easy Focus"-analyses are colour-agnostic. The development of "Easy Orientation" was especially motivated by recent request of Dr. Darren Thomson and Dr. Ricardo Pires but similar requests surfaced during the past years. Compared to similar approaches available for ImageJ, "Easy Focus" is clearly faster. It provides superior results, when compared to standard approaches such as those investigated by Mir et al. (2014) <https://cs.uwaterloo.ca/~vanbeek/Publications/spie2014.pdf>. In short, the macro "Easy Focus" allows for fast high quality and one-click focus analyses of focus series. Regards Herbie -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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