Hi Anonymous,
there is a subtle difference between the opening and saving commands:
run("Image Sequence...", ...); for opening
run("Image Sequence... ", ...); for saving - mind the blank!
Best, use Plugins>Macros>Record to determine the correct command.
BTW, the same difference, with and without a blank, can be also found for other commands, e.g.:
AVI... opening/writing avi files,
Text Image... opening/writing text images,
XY Coordinates... opening/writing selection coordinates,
LUT... opening/writing LUTs,
Process>Math>Macro vs. Process>Batch>Macro,
Edit Options>Reset vs. Plugins>Utilities>Reset,
Image>Transform>Rotate vs. ImageEdit>Selection>Rotate
Image>Scale vs. Edit>Selection>Scale
Process>Math>Set vs. Image>Zoom>Set
Michael
________________________________________________________________
On Jun 16, 2015, at 22:25, yxnsn wrote:
> Hi all, I'm a beginner at programming and would like some help with my macro code.
>
> I'm trying to 1) Import a selection of various folders containing DICOM images as individual image sequences; 2) Rename the respective individual folders using info extracted from images' DICOM header; 3) Save the DICOM images as a .tiff image sequence in their respective renamed folders.
>
> The code should cycle through one folder at a time.
>
> Dir = getDirectory("Choose a directory ");
> list = getFileList(Dir);
> setBatchMode(true);
> for (i=0; i<list.length;i++) {
> run("Image Sequence...", "open=["+Dir+list[i]+"] sort");
> seriesName = getInfo("0008,103E"); //This is a plugin that extracts info from DICOM header
> File.makeDirectory(Dir+File.separator+seriesName);
> run("Image Sequence...", "format=TIFF save=[Dir+list[i],Dir+File.separator+seriesName]")
> }
>
> I believe my problem is in the "save" part, I'm not sure what the right code should be. Also, I’d love to learn if I could’ve implemented this code in a more simple way.
>
>
> Thanks for the help!
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