Merge time points

[JenCEEC]

Hi,

I am trying to simultaneously display a 3D image of an entire time series in Fiji.  I have ~50 frames (time points) consisting of Z-stacks which contain 6 slices each.  I tried to use the 3D viewer but I was only able to obtain the single 6-slice Z-stacks, and the ability to scroll through each time point.  I would like to display this entire set of time points in one single image.  The z-stacks and time points are already collated in the proper order, so all I need is to display them like a large z-stack (i.e. ~50 frames x 6 slices ea) instead of a time series of separate z-stacks.  Any ideas?

Thanks!
Jen

[ctrueden]

Hi Jen,

> all I need is to display them like a large z-stack (i.e. ~50 frames x
> 6 slices ea) instead of a time series of separate z-stacks.

Use Image > Properties (Shift+P) to restructure your image dimensions.
Change the number of frames to 1, and the number of slices to 300 (or
whatever the total number of image planes is). Afterward, run the 3D Viewer.

Regards,
Curtis


On Thu, Feb 20, 2014 at 12:09 PM, JenCEEC <[hidden email]> wrote:

> Hi,
>
> I am trying to simultaneously display a 3D image of an entire time series
> in
> Fiji.  I have ~50 frames (time points) consisting of Z-stacks which contain
> 6 slices each.  I tried to use the 3D viewer but I was only able to obtain
> the single 6-slice Z-stacks, and the ability to scroll through each time
> point.  I would like to display this entire set of time points in one
> single
> image.  The z-stacks and time points are already collated in the proper
> order, so all I need is to display them like a large z-stack (i.e. ~50
> frames x 6 slices ea) instead of a time series of separate z-stacks.  Any
> ideas?
>
> Thanks!
> Jen
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Merge-time-points-tp5006607.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[JenCEEC]

Thank you, that worked like a charm!  And to think I passed Properties over countless times thinking that it wasn't what I needed.

Jen

---

From: Curtis Rueden [via ImageJ] [ml-node+[hidden email]]
Sent: Thursday, February 20, 2014 5:18 PM
To: Panescu, Jenny
Subject: Re: Merge time points

Hi Jen,

> all I need is to display them like a large z-stack (i.e. ~50 frames x
> 6 slices ea) instead of a time series of separate z-stacks.

Use Image > Properties (Shift+P) to restructure your image dimensions.
Change the number of frames to 1, and the number of slices to 300 (or
whatever the total number of image planes is). Afterward, run the 3D Viewer.

Regards,
Curtis


On Thu, Feb 20, 2014 at 12:09 PM, JenCEEC <[hidden email]> wrote:

> Hi,
>
> I am trying to simultaneously display a 3D image of an entire time series
> in
> Fiji.  I have ~50 frames (time points) consisting of Z-stacks which contain
> 6 slices each.  I tried to use the 3D viewer but I was only able to obtain
> the single 6-slice Z-stacks, and the ability to scroll through each time
> point.  I would like to display this entire set of time points in one
> single
> image.  The z-stacks and time points are already collated in the proper
> order, so all I need is to display them like a large z-stack (i.e. ~50
> frames x 6 slices ea) instead of a time series of separate z-stacks.  Any
> ideas?
>
> Thanks!
> Jen
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Merge-time-points-tp5006607.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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