Hello ImageJ users,
I am trying to use ImageJ to calculate the geometric properties specifically the moments of inertia and radii of bone cross-sections about the X and Y axes. The "Moment_Calculator.class" plugin doesnt seem to work when I run. If anyone has used ImageJ for this purpose, I would appreciate any thoghts on this. Is there any other macro that would best fit this purpose? I have 8-bit grey scale images obtained from micro-CT of the bones. Thanks. |
Hi Girish Ramaswamy
We have obtain a wonderful macro from Robert Day from the Royal Perth Hospital to do just the measurements you want. The only problem is that you must use an older version of ImageJ. I use version 1.35q. If you use anything newer, I don't get the same calculated values especially in bone area. Similar but not exact values for MOI and "C" If you are interested I can send you the zip file from Dr Day. Debby Schneider ----- Original Message ----- From: Girish Ramaswamy <[hidden email]> Date: Friday, April 25, 2008 12:38 pm Subject: Moment of Inertia of bone cross-sections To: [hidden email] > Hello ImageJ users, > > I am trying to use ImageJ to calculate the geometric > properties > specifically the moments of inertia and radii of bone cross-sections > about > the X and Y axes. > > The "Moment_Calculator.class" plugin doesnt seem to work when > I > run. If anyone has used ImageJ for this purpose, I would appreciate > any > thoghts on this. Is there any other macro that would best fit this > purpose? > > I have 8-bit grey scale images obtained from micro-CT of the > > bones. > > Thanks. > |
ImageJ Interest Group <[hidden email]> schrieb am 25.04.2008 20:02:34:
> The only > problem is that you must use an older version of ImageJ. I use > version 1.35q. If you use anything newer, I don't get the same > calculated values especially in bone area. Similar but not exact > values for MOI and "C" Scary!! Did you look into the reason for the difference? Maybe this is an indication of a hidden bug in newer versions of IJ that also affects other macros!? JW ______________________________________________________________________ This email has been scanned by the MessageLabs Email Security System. For more information please visit http://www.messagelabs.com/email ______________________________________________________________________ |
In reply to this post by Debra K Schneider
Hey Debby,
I downloaded ImageJ recently from the website and I think it is 1.39u. How do you say that your values are not exact? What do you validate your MOI values against? Further, I am measuring tibiae which do not have a uniform cross-section. But please do send me the zip file. I'll try running that. Thanks, Girish On 4/25/08, Debra K Schneider <[hidden email]> wrote: > > Hi Girish Ramaswamy > We have obtain a wonderful macro from Robert Day from the Royal Perth > Hospital to do just the measurements you want. The only problem is that you > must use an older version of ImageJ. I use version 1.35q. If you use > anything newer, I don't get the same calculated values especially in bone > area. Similar but not exact values for MOI and "C" > If you are interested I can send you the zip file from Dr Day. > Debby Schneider > > > ----- Original Message ----- > From: Girish Ramaswamy <[hidden email]> > Date: Friday, April 25, 2008 12:38 pm > Subject: Moment of Inertia of bone cross-sections > To: [hidden email] > > > > Hello ImageJ users, > > > > I am trying to use ImageJ to calculate the geometric > > properties > > specifically the moments of inertia and radii of bone cross-sections > > about > > the X and Y axes. > > > > The "Moment_Calculator.class" plugin doesnt seem to work when > > I > > run. If anyone has used ImageJ for this purpose, I would appreciate > > any > > thoghts on this. Is there any other macro that would best fit this > > purpose? > > > > I have 8-bit grey scale images obtained from micro-CT of the > > > > bones. > > > > Thanks. > > > |
In reply to this post by Joachim Wesner
Hi Joachim
I have asked several people even Dr Day, who wrote the macros, but they didn't have time to troubleshoot and I don't know how, so people suggested I just stick with the ImageJ version which worked, and that's what I have done. Debby ----- Original Message ----- From: Joachim Wesner <[hidden email]> Date: Friday, April 25, 2008 2:16 pm Subject: Antwort: Re: Moment of Inertia of bone cross-sections To: [hidden email] > ImageJ Interest Group <[hidden email]> schrieb am 25.04.2008 20:02:34: > > > The only > > problem is that you must use an older version of ImageJ. I use > > version 1.35q. If you use anything newer, I don't get the same > > calculated values especially in bone area. Similar but not exact > > values for MOI and "C" > > Scary!! Did you look into the reason for the difference? Maybe this > is an indication of a hidden bug in newer versions of IJ that also > affects other macros!? > > JW > > > ______________________________________________________________________ > This email has been scanned by the MessageLabs Email Security System. > For more information please visit http://www.messagelabs.com/email > ______________________________________________________________________ > |
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