Multi Measure v4 Plugin Records Slice Data?

[Perry, Griffin M]

Dear ImageJ Users,

 

I'm selecting ROIs using the Multi Measure plugin...when I go to measure
the ROIs, it doesn't record the slice data.  I have the Multi Option:
Label Slices checked.  Shouldn't that record the ROI for that slice and
that slice only?  I'm confused.  I am using version 4.  Any help?

 

Griffin Perry

[Robert Dougherty]

Griffin,

The "Measure" button in Multi Measure does not record the slice label.  It
also does not measure the current slice if you answer "No" to the question
about processing all of the slices.  If you answer "No," it just measures
the first slice.  So if it were to label the slice, the label would be 1.
Can you get the results you need using the "Multi" button instead of the
"Measure" button?  I'm thinking of deleting the "Measure" button from Multi
Measure.  I almost suggested using ImageJ's ROI manager if you want to get
the "Measure" behavior (results from several ROIs listed sequentially in a
column vs. the row presentation of "Multi"), but it also seems to measure
the first slice only if you answer "No."  (Wayne, is this a bug?)  One thing
you can do is select a single ROI in ROI Manager or Multi Measure and use
Analyze/Measure directly from the Toolbar.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone [phone]
Fax [phone]
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Perry, Griffin M
> Sent: Thursday, July 27, 2006 8:29 AM
> To: [hidden email]
> Subject: Multi Measure v4 Plugin Records Slice Data?
>
> Dear ImageJ Users,
>
>
>
> I'm selecting ROIs using the Multi Measure plugin...when I go to measure
> the ROIs, it doesn't record the slice data.  I have the Multi Option:
> Label Slices checked.  Shouldn't that record the ROI for that slice and
> that slice only?  I'm confused.  I am using version 4.  Any help?
>
>
>
> Griffin Perry

[Perry, Griffin M]

Thanks for the reply Bob.  

I liked MultiMeasure because it gave you the option of Labeling All
ROIs.  However, I've found out ROIManager does the same with combine
(just without numbering them).  

When measuring ROIs through ROIManager, you have to make sure that NONE
of the ROIs are selected when measuring.  This will then measure the
ROIs in ROI Manager (kinda backwards?) for the particular slice that
they were selected on.  If an ROI is highlighted, it will then ask if
you would like to go through the whole stack.  Even if you do say no
though, it will measure the ROI on the slice that you want.

While touching on this behaviour, the only way to save roiset.zip file
in ROIManager is to make sure that NONE of the ROIs are selected when
saving (kinda backwards?).  If an ROI is highlighted in the ROIManager,
it will only give you the option to save a .roi.  It would be nice in
future versions (if possible) if you were able to Select All then save
as an roiset.zip or be able to pick and choose ROIs from the ROIManager
and save those chosen ones in an roiset.zip file.  Just a suggestion.  

Thanks again Bob for your reply.  

-Griffin Perry

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Robert Dougherty
Sent: Thursday, July 27, 2006 11:52 AM
To: [hidden email]
Subject: Re: Multi Measure v4 Plugin Records Slice Data?

Griffin,

The "Measure" button in Multi Measure does not record the slice label.
It
also does not measure the current slice if you answer "No" to the
question
about processing all of the slices.  If you answer "No," it just
measures
the first slice.  So if it were to label the slice, the label would be
1.
Can you get the results you need using the "Multi" button instead of the
"Measure" button?  I'm thinking of deleting the "Measure" button from
Multi
Measure.  I almost suggested using ImageJ's ROI manager if you want to
get
the "Measure" behavior (results from several ROIs listed sequentially in
a
column vs. the row presentation of "Multi"), but it also seems to
measure
the first slice only if you answer "No."  (Wayne, is this a bug?)  One
thing
you can do is select a single ROI in ROI Manager or Multi Measure and
use
Analyze/Measure directly from the Toolbar.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone [phone]
Fax [phone]
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Perry, Griffin M
> Sent: Thursday, July 27, 2006 8:29 AM
> To: [hidden email]
> Subject: Multi Measure v4 Plugin Records Slice Data?
>
> Dear ImageJ Users,
>
>
>
> I'm selecting ROIs using the Multi Measure plugin...when I go to

measure
> the ROIs, it doesn't record the slice data.  I have the Multi Option:
> Label Slices checked.  Shouldn't that record the ROI for that slice
and
> that slice only?  I'm confused.  I am using version 4.  Any help?
>
>
>
> Griffin Perry

[Liu, Dongfang (NIH/NIAID) [F]]

Dear ALL,

Image J couldn't open my times-series images. From Log window, it
displayed "ZVI Reader: Could not find header information.". what' s
going wrong?

[John Cahill]

Hi,
I too have had the same problem with individual 16 bit monochrome ZVI
images out of AxioVison 4.5 ( ImageJ 1.37j )
I found I could import these images using the following method
File/Import/RAW
16 bit unsigned
width 1388
Height 1040
Offset to First image 20804
Number of images 1
Gap between images 0
Little Endian Byte order

You may be able to adapt this.

John Cahill
Carlisle MA



On 7/28/06, Liu, Dongfang (NIH/NIAID) [F] <[hidden email]> wrote:
> Dear ALL,
>
> Image J couldn't open my times-series images. From Log window, it
> displayed "ZVI Reader: Could not find header information.". what' s
> going wrong?
>

[Perry, Griffin M]

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Perry, Griffin M
Sent: Thursday, July 27, 2006 1:55 PM
To: [hidden email]
Subject: Re: Multi Measure v4 Plugin Records Slice Data?

Thanks for the reply Bob.  

I liked MultiMeasure because it gave you the option of Labeling All
ROIs.  However, I've found out ROIManager does the same with combine
(just without numbering them).  

When measuring ROIs through ROIManager, you have to make sure that NONE
of the ROIs are selected when measuring.  This will then measure the
ROIs in ROI Manager (kinda backwards?) for the particular slice that
they were selected on.  If an ROI is highlighted, it will then ask if
you would like to go through the whole stack.  Even if you do say no
though, it will measure the ROI on the slice that you want.

While touching on this behaviour, the only way to save roiset.zip file
in ROIManager is to make sure that NONE of the ROIs are selected when
saving (kinda backwards?).  If an ROI is highlighted in the ROIManager,
it will only give you the option to save a .roi.  It would be nice in
future versions (if possible) if you were able to Select All then save
as an roiset.zip or be able to pick and choose ROIs from the ROIManager
and save those chosen ones in an roiset.zip file.  Just a suggestion.  

Thanks again Bob for your reply.  

-Griffin Perry

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
Robert Dougherty
Sent: Thursday, July 27, 2006 11:52 AM
To: [hidden email]
Subject: Re: Multi Measure v4 Plugin Records Slice Data?

Griffin,

The "Measure" button in Multi Measure does not record the slice label.
It
also does not measure the current slice if you answer "No" to the
question
about processing all of the slices.  If you answer "No," it just
measures
the first slice.  So if it were to label the slice, the label would be
1.
Can you get the results you need using the "Multi" button instead of the
"Measure" button?  I'm thinking of deleting the "Measure" button from
Multi
Measure.  I almost suggested using ImageJ's ROI manager if you want to
get
the "Measure" behavior (results from several ROIs listed sequentially in
a
column vs. the row presentation of "Multi"), but it also seems to
measure
the first slice only if you answer "No."  (Wayne, is this a bug?)  One
thing
you can do is select a single ROI in ROI Manager or Multi Measure and
use
Analyze/Measure directly from the Toolbar.

Bob

Robert P. Dougherty, Ph.D.
President, OptiNav, Inc.
Phone [phone]
Fax [phone]
www.optinav.com
 

> -----Original Message-----
> From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of
> Perry, Griffin M
> Sent: Thursday, July 27, 2006 8:29 AM
> To: [hidden email]
> Subject: Multi Measure v4 Plugin Records Slice Data?
>
> Dear ImageJ Users,
>
>
>
> I'm selecting ROIs using the Multi Measure plugin...when I go to

measure
> the ROIs, it doesn't record the slice data.  I have the Multi Option:
> Label Slices checked.  Shouldn't that record the ROI for that slice
and
> that slice only?  I'm confused.  I am using version 4.  Any help?
>
>
>
> Griffin Perry