Hello Everyone,
I am new to this forum and ImageJ. I am looking for some advice on how I could go about automatically measuring the length of multiple objects in one image. I am currently working on a project that requires me to get the lengths of multiple corn ears from one image. I have downloaded ObjectJ and been trying to use that but I am not familiar enough with either program to get my desired results. My current approach is using SIOX segmentation to get the corn ears separated from the background and using feret diameter to find the maximum length of each ear. I have not been able to get this to work like I want it to. Also, due to the large number of photos I would like to be able to automate this process if at all possible. If anyone has some info on where a good place for me to start would be, I would appreciate it. I am new to this program so if there are any good websites or articles that would help me to get familiar with it, I would appreciate some guidance. Thanks, Nicholas Hayden |
Hi Nicholas,
Try this in a macro: 1. rotate your image so that the corn ears are aligned vertically (as far as possible); 2. use your preferred segmentation to isolate the ears w/thresholding; 3. use the Particle Analyser to put a box around each object (this is a really neat function of the Particle Analyser). The results table will contain the width and height of the smallest box that encompasses each ear object. I use a similar technique in the CANAPI algorithm (Chopping, M., (2011), CANAPI: Canopy Analysis with Panchromatic Imagery, Remote Sensing Letters 2(1): 21-29, published 17 June 2010 http://dx.doi.org/10.1080/01431161.2010.486805). Best wishes, Mark Mark Chopping, Ph.D. Professor, Department of Earth & Environmental Studies Center for Environmental & Life Sciences LS 312 Montclair State University, Montclair, NJ 07043 - It's All Here! NASA ABoVE, MISR, MODIS, & Terrestrial Ecology Science Teams ------------------------------------------------------------ E: [hidden email] F: (973) 655-4072 W: http://www.montclair.edu/csam/remote-sensing-lab/ > Date: Thu, 28 Jan 2016 08:29:53 -0800 > From: nhayden2 <[hidden email]> > Reply-To: [hidden email] > To: [hidden email] > Subject: Multiple Object Length Measurement > > Hello Everyone, > > I am new to this forum and ImageJ. I am looking for some advice on how I > could go about automatically measuring the length of multiple objects in one > image. I am currently working on a project that requires me to get the > lengths of multiple corn ears from one image. > > I have downloaded ObjectJ and been trying to use that but I am not familiar > enough with either program to get my desired results. > > My current approach is using SIOX segmentation to get the corn ears > separated from the background and using feret diameter to find the maximum > length of each ear. I have not been able to get this to work like I want it > to. > > Also, due to the large number of photos I would like to be able to automate > this process if at all possible. > > If anyone has some info on where a good place for me to start would be, I > would appreciate it. > > I am new to this program so if there are any good websites or articles that > would help me to get familiar with it, I would appreciate some guidance. > > Thanks, > > Nicholas Hayden > > > > > -- > View this message in context: http://imagej.1557.x6.nabble.com/Multiple-Object-Length-Measurement-tp5015476.html > Sent from the ImageJ mailing list archive at Nabble.com. > > -- > ImageJ mailing list: http://imagej.nih.gov/ij/list.html > -- ImageJ mailing list: http://imagej.nih.gov/ij/list.html |
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