OSX 10.10 quicktime troubles

[Randy Polson]

Hi-

I'm using ImageJ 1.49t (64bit) on a Mac running OS X 10.10.  I'd like to write out a stack as a movie.  The option File>Save As>Movie...  gives an exception:

ImageJ 1.49t; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.3; 1354MB of 8192MB (16%)
 
java.lang.UnsatisfiedLinkError: /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib:  Library not loaded: @rpath/libopencv_core.2.4.dylib   Referenced from: /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib   Reason: image not found

The File-Save AS-Quicktime movie also gives an error. java.lang.NoClassDefFoundError: quicktime/std/StdQT/Constants
the plugin QT Stack writer gives the same error.  These latter two seem to depend on a java to quicktime component that I can't find on the Apple site.

Have I failed to install something, or has the latest Yosemite update sort of broken things?  Is there an easier workaround other than exporting the stack and trying to use iMovie?

Thanks,
Randy

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[Rasband, Wayne (NIH/NIMH) [E]]

> On May 27, 2015, at 4:16 PM, Randy Polson <[hidden email]> wrote:
>
> Hi-
>
> I'm using ImageJ 1.49t (64bit) on a Mac running OS X 10.10.  I'd like to write out a stack as a movie.  The option File>Save As>Movie...  gives an exception:
>
> ImageJ 1.49t; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.3; 1354MB of 8192MB (16%)
>
> java.lang.UnsatisfiedLinkError: /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib:  Library not loaded: @rpath/libopencv_core.2.4.dylib   Referenced from: /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib   Reason: image not found
>
> The File-Save AS-Quicktime movie also gives an error. java.lang.NoClassDefFoundError: quicktime/std/StdQT/Constants
> the plugin QT Stack writer gives the same error.  These latter two seem to depend on a java to quicktime component that I can't find on the Apple site.
>
> Have I failed to install something, or has the latest Yosemite update sort of broken things?  Is there an easier workaround other than exporting the stack and trying to use iMovie?

OS X 10.10 (Yosemite) does not include key files required for running commands like File>Import>Using QuickTime and File>Save As>QuickTime Movie that use QuickTime for Java. You can work around this problem by copying the files QTJava.zip and libQTJNative.jnilib, available at <http://imagej.nih.gov/ij/download/qt/>, into ~/Library/Java/Extensions, where "~" is your home directory. Yosemite hides the Library folder by default, so you will need to open your home folder and check "Show Library Folder" in the View>Show View Options dialog. Before copying the files, you will need to create the ~/Library/Java and ~/Library/Java/Extensions folders.

-wayne

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[Randy Polson]

Thanks for the link.

I followed the instructions, but it still doesn't work to save as a movie.
Depending on the combination of wrapper and codec I either get an exception
or a file size of 6kB.  I have a time constraint and am unable to work on
this so I'll just import single images into iMovie and work from there.

Best,
Randy

On Thu, May 28, 2015 at 10:19 PM, Rasband, Wayne (NIH/NIMH) [E] <
[hidden email]> wrote:

> > On May 27, 2015, at 4:16 PM, Randy Polson <[hidden email]> wrote:
> >
> > Hi-
> >
> > I'm using ImageJ 1.49t (64bit) on a Mac running OS X 10.10.  I'd like to
> write out a stack as a movie.  The option File>Save As>Movie...  gives an
> exception:
> >
> > ImageJ 1.49t; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.3; 1354MB of 8192MB
> (16%)
> >
> > java.lang.UnsatisfiedLinkError:
> /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib:
> Library not loaded: @rpath/libopencv_core.2.4.dylib   Referenced from:
> /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib
>  Reason: image not found
> >
> > The File-Save AS-Quicktime movie also gives an error.
> java.lang.NoClassDefFoundError: quicktime/std/StdQT/Constants
> > the plugin QT Stack writer gives the same error.  These latter two seem
> to depend on a java to quicktime component that I can't find on the Apple
> site.
> >
> > Have I failed to install something, or has the latest Yosemite update
> sort of broken things?  Is there an easier workaround other than exporting
> the stack and trying to use iMovie?
>
> OS X 10.10 (Yosemite) does not include key files required for running
> commands like File>Import>Using QuickTime and File>Save As>QuickTime Movie
> that use QuickTime for Java. You can work around this problem by copying
> the files QTJava.zip and libQTJNative.jnilib, available at <
> http://imagej.nih.gov/ij/download/qt/>, into ~/Library/Java/Extensions,
> where "~" is your home directory. Yosemite hides the Library folder by
> default, so you will need to open your home folder and check "Show Library
> Folder" in the View>Show View Options dialog. Before copying the files, you
> will need to create the ~/Library/Java and ~/Library/Java/Extensions
> folders.
>
> -wayne
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[ctrueden]

Hi Randy,

Did you try Plugins > Bio-Formats > Bio-Formats Exporter? It can write
uncompressed QuickTime movies, which you can then compress as desired using
QuickTime Pro or other video tool.

Regards,
Curtis

On Fri, May 29, 2015 at 4:34 PM, Randy Polson <[hidden email]> wrote:

> Thanks for the link.
>
> I followed the instructions, but it still doesn't work to save as a movie.
> Depending on the combination of wrapper and codec I either get an exception
> or a file size of 6kB.  I have a time constraint and am unable to work on
> this so I'll just import single images into iMovie and work from there.
>
> Best,
> Randy
>
> On Thu, May 28, 2015 at 10:19 PM, Rasband, Wayne (NIH/NIMH) [E] <
> [hidden email]> wrote:
>
> > > On May 27, 2015, at 4:16 PM, Randy Polson <[hidden email]> wrote:
> > >
> > > Hi-
> > >
> > > I'm using ImageJ 1.49t (64bit) on a Mac running OS X 10.10.  I'd like
> to
> > write out a stack as a movie.  The option File>Save As>Movie...  gives an
> > exception:
> > >
> > > ImageJ 1.49t; Java 1.6.0_65 [64-bit]; Mac OS X 10.10.3; 1354MB of
> 8192MB
> > (16%)
> > >
> > > java.lang.UnsatisfiedLinkError:
> >
> /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib:
> > Library not loaded: @rpath/libopencv_core.2.4.dylib   Referenced from:
> >
> /private/var/folders/m4/sdh_jsyx3vvf2hq3m19x06mr0000gn/T/javacpp1432757485084254000/libjniopencv_core.dylib
> >  Reason: image not found
> > >
> > > The File-Save AS-Quicktime movie also gives an error.
> > java.lang.NoClassDefFoundError: quicktime/std/StdQT/Constants
> > > the plugin QT Stack writer gives the same error.  These latter two seem
> > to depend on a java to quicktime component that I can't find on the Apple
> > site.
> > >
> > > Have I failed to install something, or has the latest Yosemite update
> > sort of broken things?  Is there an easier workaround other than
> exporting
> > the stack and trying to use iMovie?
> >
> > OS X 10.10 (Yosemite) does not include key files required for running
> > commands like File>Import>Using QuickTime and File>Save As>QuickTime
> Movie
> > that use QuickTime for Java. You can work around this problem by copying
> > the files QTJava.zip and libQTJNative.jnilib, available at <
> > http://imagej.nih.gov/ij/download/qt/>, into ~/Library/Java/Extensions,
> > where "~" is your home directory. Yosemite hides the Library folder by
> > default, so you will need to open your home folder and check "Show
> Library
> > Folder" in the View>Show View Options dialog. Before copying the files,
> you
> > will need to create the ~/Library/Java and ~/Library/Java/Extensions
> > folders.
> >
> > -wayne
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

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