Hi Christophe,
This situation is what the Bio-Formats Importer's "group files with similar
names" option is designed to handle. It should find two "numerical blocks"
and detect the correct numbering for each. For the "_ch" numbering,
Bio-Formats will assume the axis is for channels. For "image" it will be
unsure, but should guess either Z or T. Thus, if you open as a hyperstack,
you should have two axes. Please let me know if not and we will investigate.
We are planning to include a few more graphical tools for controlling
exactly how axes are detected and assigned, but have not yet had time to do
so. As always, if you have any suggestions, please let us know.
-Curtis
On Fri, May 16, 2008 at 5:50 AM, Christophe Leterrier <
[hidden email]> wrote:
> Dear all,
> I have a bunch of images that are :
>
> image01_ch01
> image01_ch02
> image01_ch03
> image02_ch01
> image02_ch02
> image02_ch03
> image03_ch01
>
> ... and so on.
>
> I'd like to open them as an Hyperstack with ch_ as channels and the
> image counter as time points or z-slice, to browse efficacely the
> whole set of data.
> An Import Sequence... command that allow to specify that would be
> cool, but doesn't exist. If I import all the sequence as a stack, what
> is the most efficient way to transform it into an hyperstack ?
>
> Christophe
>
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