PeakFindertool

[Houssin, Nathalie Samantha Laetitia]

Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.html
After saving the macro in the plugin folder (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department
Plageman's Lab
Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: [phone]




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[CARL Philippe (LBP)]

Dear Nathalie,
By copying the PeakFinderTool.txt file (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt) in the ImageJ\macros\toolsets\ folder, you will find PeakFinderTool as a new choice within the ImageJ toolsets (i.e. by clicking on >> on the right of the button menu).
My best regards,
Philippe

Le Jeudi 11 Avril 2019 18:31 CEST, "Houssin, Nathalie Samantha Laetitia" <[hidden email]> a écrit:

> Hi all,
>
> I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
> https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.html
> After saving the macro in the plugin folder (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
> Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)
>
> Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)
>
> Thank you for your time and help,
>
> Nathalie
>
>
> Nathalie HOUSSIN, PhD
>
> Ohio Sate University - Optometry Department
> Plageman's Lab
> Fry Hall room 341C
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: [phone]
>
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Straub, Volko A. (Dr.)]

Hi Nathalie,

The PeakFinderTool is a macro rather than a plugin. In order to install a macro, go to 'Plugins->Macros->Install' and locate the PeakFinderTool file that you downloaded. When you click 'Open', the macro will be installed and a button will be added to the right of the ImageJ menu bar. You will also find some extra items added to the 'Plugins->Macros' menu relating to the PeakFinderTool.

Alternatively, you can drop the PeakFinderTool file into the 'macros/toolsets' folder within your ImageJ directory. You can then start the macro by clicking on the button with the two arrows pointing to the right (>>; on right side of ImageJ menu bar) and select the PeakFinderTool from the drop-down list.

Hope this helps,
Volko



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Houssin, Nathalie Samantha Laetitia
Sent: 11 April 2019 17:32
To: [hidden email]
Subject: PeakFindertool

Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2Fpeakfinder.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=I04u%2FNfVZM%2BKb0fQGdQFGt%2FmxjiiukMcsdl7lPz%2F3vw%3D&amp;reserved=0
After saving the macro in the plugin folder (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2FPeakFinderTool.txt&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=i68xD%2Fw3IYjIhol%2ByO42oVdMAIVsLyhow2YExghKfS8%3D&amp;reserved=0), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department Plageman's Lab Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: [phone]




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ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=nwp%2BWON9MGudVpnD%2BvOaHQjGkQoPcyf0ax%2FBMi2Tkw8%3D&amp;reserved=0

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[Houssin, Nathalie Samantha Laetitia]

Dear Philippe,
Thank you very much for the detailed explanations.
It is working as expected,

Best regards,

Nathalie

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of CARL Philippe (LBP)
Sent: Thursday, April 11, 2019 8:04 PM
To: [hidden email]
Subject: Re: PeakFindertool

Dear Nathalie,
By copying the PeakFinderTool.txt file (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt) in the ImageJ\macros\toolsets\ folder, you will find PeakFinderTool as a new choice within the ImageJ toolsets (i.e. by clicking on >> on the right of the button menu).
My best regards,
Philippe
 
Le Jeudi 11 Avril 2019 18:31 CEST, "Houssin, Nathalie Samantha Laetitia" <[hidden email]> a écrit:
 

> Hi all,
>
> I am trying to install this plugin to ImageJ (version 1.52) for
> analyzing the distribution of a protein on my images
> https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/peakfinder.ht
> ml After saving the macro in the plugin folder
> (https://sils.fnwi.uva.nl/bcb/objectj/examples/PeakFinder/PeakFinderTool.txt), I have installed it.
> Although, I have a message that the plugin has been successfully
> installed and after restarting the software, I can't find the tool
> anywhere in the options listed in the different the tabs (Analyze or
> Plugins)
>
> Could you give me some advice on how to run this plugin ? (it seems
> that I miss something in the installation steps)
>
> Thank you for your time and help,
>
> Nathalie
>
>
> Nathalie HOUSSIN, PhD
>
> Ohio Sate University - Optometry Department Plageman's Lab Fry Hall
> room 341C
> 338 W 10th avenue
> Columbus, Ohio 43210
> Tel: [phone]
>
>
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html

 
 
 
 

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[Houssin, Nathalie Samantha Laetitia]

Thank you Volko for giving me further explanations on the subtleties of ImageJ semantics. It definitely helps !
I have been able to install the macro

Bests,

Nathalie

-----Original Message-----
From: Straub, Volko A. (Dr.) [mailto:[hidden email]]
Sent: Friday, April 12, 2019 4:04 AM
To: [hidden email]
Subject: Re: PeakFindertool

Hi Nathalie,

The PeakFinderTool is a macro rather than a plugin. In order to install a macro, go to 'Plugins->Macros->Install' and locate the PeakFinderTool file that you downloaded. When you click 'Open', the macro will be installed and a button will be added to the right of the ImageJ menu bar. You will also find some extra items added to the 'Plugins->Macros' menu relating to the PeakFinderTool.

Alternatively, you can drop the PeakFinderTool file into the 'macros/toolsets' folder within your ImageJ directory. You can then start the macro by clicking on the button with the two arrows pointing to the right (>>; on right side of ImageJ menu bar) and select the PeakFinderTool from the drop-down list.

Hope this helps,
Volko



-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Houssin, Nathalie Samantha Laetitia
Sent: 11 April 2019 17:32
To: [hidden email]
Subject: PeakFindertool

Hi all,

I am trying to install this plugin to ImageJ (version 1.52) for analyzing the distribution of a protein on my images
https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2Fpeakfinder.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=I04u%2FNfVZM%2BKb0fQGdQFGt%2FmxjiiukMcsdl7lPz%2F3vw%3D&amp;reserved=0
After saving the macro in the plugin folder (https://eur03.safelinks.protection.outlook.com/?url=https%3A%2F%2Fsils.fnwi.uva.nl%2Fbcb%2Fobjectj%2Fexamples%2FPeakFinder%2FPeakFinderTool.txt&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=i68xD%2Fw3IYjIhol%2ByO42oVdMAIVsLyhow2YExghKfS8%3D&amp;reserved=0), I have installed it.
Although, I have a message that the plugin has been successfully installed and after restarting the software, I can't find the tool anywhere in the options listed in the different the tabs (Analyze or Plugins)

Could you give me some advice on how to run this plugin ? (it seems that I miss something in the installation steps)

Thank you for your time and help,

Nathalie


Nathalie HOUSSIN, PhD

Ohio Sate University - Optometry Department Plageman's Lab Fry Hall room 341C
338 W 10th avenue
Columbus, Ohio 43210
Tel: [phone]




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ImageJ mailing list: https://eur03.safelinks.protection.outlook.com/?url=http%3A%2F%2Fimagej.nih.gov%2Fij%2Flist.html&amp;data=02%7C01%7Cvs64%40leicester.ac.uk%7C8babfca5cb2f4acc7f3808d6be9b541b%7Caebecd6a31d44b0195ce8274afe853d9%7C0%7C1%7C636905971674351799&amp;sdata=nwp%2BWON9MGudVpnD%2BvOaHQjGkQoPcyf0ax%2FBMi2Tkw8%3D&amp;reserved=0

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