PhotoShop Plug-Ins Possible with ImageJ?

[KenO]

Hi Curtis,

Thanks for the info!

Are PhotoShop plug-ins possible with ImageJ?  If No are GIMP plug-ins possible?

Thanks again for your help!

Ken
 

________________________________
From: ctrueden [via ImageJ] <[hidden email]>
To: KenO <[hidden email]>
Sent: Friday, April 3, 2015 10:06 AM
Subject: Re: Are Pixel Level Crops Possible with ImageJ?



Hi Ken,

> Do not know the difference between ImageJ and Fiji

See the top of http://imagej.net/Fiji for an explanation. Please ask if
anything is not clear, so that we can improve the documentation.

> As beginner this seems good to me, problem is the Windows PCs I use do
> not have Java 6 (or later) runtime installed. Is there a version that
> has everything needed in a portable Windows app?

The Windows Fiji downloads include a Java JRE, so you do not need to
install one separately.

However, the version bundled is Java 6 (1.6.0_24) which is very old, with
many bugs since fixed in Java 7 and Java 8. Personally I would advise using
a newer version of Java.

We will be updating the bundles later this year to include a newer version
of Java, as time allows [1]. In the meantime, you can certainly replace the
version of Java in the "Fiji.app/java" folder with your own preferred
version of the JRE.

Regards,
Curtis

[1] https://github.com/imagej/imagej/issues/118

On Tue, Mar 31, 2015 at 12:10 PM, KenO <
[hidden email]> wrote:

> Hi Theresa,
> Reason for late response is I had a number of projects to complete.
> Thanks for the tip!  "Put the cursor where you want to zoom. Press the +
> key repeatedly to reach the desired zoom level. Maximum zoom is 3200%"
> As an ImageJ beginner I have tried to read the user guide and man but
> found no mention which is why I posted.  Any recommendations concerning
> tutorials...
> Would like to use ImageJ on different Windows PCs without installing so  a
> portable ImageJ is what I would like to download.
> Googled using "imagej portable windows" and found "Downloads - Fiji
> fiji.sc/Downloads Fiji Dec 22, 2014 - ImageJ will run on any system that
> has a Java 6 (or later) runtime installed. ... Windows XP, Vista, 7 or 8
> with Java installed from java.com; Mac OS X 10.5 "Leopard" ... ImageJ and
> Fiji are distributed as portable applications."
> Do not know the difference between ImageJ and Fiji so went to Fiji
> (software) wiki  http://en.wikipedia.org/wiki/Fiji_%28software%29  and
> read "One of Fiji's principal aims is to make the installation of ImageJ,
> Java, Java 3D, the plugins, and further convenient components, as easy as
> possible. As a consequence, Fiji enjoys more and more active users."
> As beginner this seems good to me, problem is the Windows PCs I use do not
> have Java 6 (or later) runtime installed.
> Is there a version that has everything needed in a portable Windows app?
> Thanks again for your help!
> Ken
>
>
>
>
> ________________________________
>  From: "Swayne, Theresa C. [via ImageJ]" <
> [hidden email]>
> To: KenO <[hidden email]>
> Sent: Monday, March 23, 2015 4:01 PM
> Subject: Re: Are Pixel Level Crops Possible with ImageJ?
>
>
>
> Hi Ken,
>
> Yes, you can do this.
>
> Put the cursor where you want to zoom.
> Press the + key repeatedly to reach the desired zoom level. Maximum zoom
> is 3200% -- more than enough to see pixels.
> Make a rectangular ROI.  Use the - (minus) key to zoom out as needed and
> adjust the corners.
> Image > Crop to complete the cropping.
>
> Hope this helps,
> Theresa
>
> On Mar 23, 2015, at 3:17 PM, KenO <[hidden email]<mailto:[hidden email]>>
> wrote:
>
> Have some ~ 40 MP JPEGs that I want to be able to zoom  right in, eg >400%,
> until I can clearly see individual pixels, and then set a crop line.
>
> Is this possible with ImageJ?
>
> If yes would appreciate suggestions.
>
> Thanks
>
> Ken
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121.html
> Sent from the ImageJ mailing list archive at Nabble.com<http://Nabble.com
> >.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
> ------------------------------------
> Please note:  My email address has changed to [hidden email]<mailto:[hidden
> email]>.
>
> Theresa Swayne, Ph.D.
> Manager
> Confocal and Specialized Microscopy Shared Resource<
> http://hiccc.columbia.edu/research/sharedresources/confocal>
>
> Herbert Irving Comprehensive Cancer Center
> Columbia University Medical Center
> 1130 St. Nicholas Ave., Room 222A
> New York, NY 10032
> Phone: [phone]
>
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>
>
>
>
> ________________________________
>
> If you reply to this email, your message will be added to the discussion
> below:
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012122.html
> To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click
> here.
> NAML
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012271.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html


________________________________

If you reply to this email, your message will be added to the discussion below:http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012329.html


To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click here.
NAML

[ctrueden]

Hi Ken,

> Are PhotoShop plug-ins possible with ImageJ?  If No are GIMP plug-ins
> possible?

To my knowledge, no one has created a bridge between those respective
programs' plugin mechanisms. Particularly for Gimp + ImageJ though, it
should be doable for a skilled programmer. The main complication is that
the ImageJ adapter would need to use native bindings to call into the GIMP
API. Photoshop presents an additional complication in that it is closed
source.

Regards,
Curtis

On Tue, Apr 7, 2015 at 4:26 PM, KenO <
[hidden email]> wrote:

> Hi Curtis,
> Thanks for the info!
> Are PhotoShop plug-ins possible with ImageJ?  If No are GIMP plug-ins
> possible?
> Thanks again for your help!
> Ken
>
>
>
>
>
> ________________________________
>  From: ctrueden [via ImageJ] <[hidden email]>
> To: KenO <[hidden email]>
> Sent: Friday, April 3, 2015 10:06 AM
> Subject: Re: Are Pixel Level Crops Possible with ImageJ?
>
>
>
> Hi Ken,
>
> > Do not know the difference between ImageJ and Fiji
>
> See the top of http://imagej.net/Fiji for an explanation. Please ask if
> anything is not clear, so that we can improve the documentation.
>
> > As beginner this seems good to me, problem is the Windows PCs I use do
> > not have Java 6 (or later) runtime installed. Is there a version that
> > has everything needed in a portable Windows app?
>
> The Windows Fiji downloads include a Java JRE, so you do not need to
> install one separately.
>
> However, the version bundled is Java 6 (1.6.0_24) which is very old, with
> many bugs since fixed in Java 7 and Java 8. Personally I would advise using
> a newer version of Java.
>
> We will be updating the bundles later this year to include a newer version
> of Java, as time allows [1]. In the meantime, you can certainly replace the
> version of Java in the "Fiji.app/java" folder with your own preferred
> version of the JRE.
>
> Regards,
> Curtis
>
> [1] https://github.com/imagej/imagej/issues/118
>
> On Tue, Mar 31, 2015 at 12:10 PM, KenO <
> [hidden email]> wrote:
>
>
> > Hi Theresa,
> > Reason for late response is I had a number of projects to complete.
> > Thanks for the tip!  "Put the cursor where you want to zoom. Press the +
> > key repeatedly to reach the desired zoom level. Maximum zoom is 3200%"
> > As an ImageJ beginner I have tried to read the user guide and man but
> > found no mention which is why I posted.  Any recommendations concerning
> > tutorials...
> > Would like to use ImageJ on different Windows PCs without installing so
>  a
> > portable ImageJ is what I would like to download.
> > Googled using "imagej portable windows" and found "Downloads - Fiji
> > fiji.sc/Downloads Fiji Dec 22, 2014 - ImageJ will run on any system that
> > has a Java 6 (or later) runtime installed. ... Windows XP, Vista, 7 or 8
> > with Java installed from java.com; Mac OS X 10.5 "Leopard" ... ImageJ
> and
> > Fiji are distributed as portable applications."
> > Do not know the difference between ImageJ and Fiji so went to Fiji
> > (software) wiki  http://en.wikipedia.org/wiki/Fiji_%28software%29  and
> > read "One of Fiji's principal aims is to make the installation of ImageJ,
> > Java, Java 3D, the plugins, and further convenient components, as easy as
> > possible. As a consequence, Fiji enjoys more and more active users."
> > As beginner this seems good to me, problem is the Windows PCs I use do
> not
> > have Java 6 (or later) runtime installed.
> > Is there a version that has everything needed in a portable Windows app?
> > Thanks again for your help!
> > Ken
> >
> >
> >
> >
> > ________________________________
> >  From: "Swayne, Theresa C. [via ImageJ]" <
> > [hidden email]>
> > To: KenO <[hidden email]>
> > Sent: Monday, March 23, 2015 4:01 PM
> > Subject: Re: Are Pixel Level Crops Possible with ImageJ?
> >
> >
> >
> > Hi Ken,
> >
> > Yes, you can do this.
> >
> > Put the cursor where you want to zoom.
> > Press the + key repeatedly to reach the desired zoom level. Maximum zoom
> > is 3200% -- more than enough to see pixels.
> > Make a rectangular ROI.  Use the - (minus) key to zoom out as needed and
> > adjust the corners.
> > Image > Crop to complete the cropping.
> >
> > Hope this helps,
> > Theresa
> >
> > On Mar 23, 2015, at 3:17 PM, KenO <[hidden email]<mailto:[hidden
> email]>>
> > wrote:
> >
> > Have some ~ 40 MP JPEGs that I want to be able to zoom  right in, eg
> >400%,
> > until I can clearly see individual pixels, and then set a crop line.
> >
> > Is this possible with ImageJ?
> >
> > If yes would appreciate suggestions.
> >
> > Thanks
> >
> > Ken
> >
> >
> >
> > --
> > View this message in context:
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121.html
> > Sent from the ImageJ mailing list archive at Nabble.com<
> http://Nabble.com
> > >.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> > ------------------------------------
> > Please note:  My email address has changed to [hidden email]<mailto:
> [hidden
> > email]>.
> >
> > Theresa Swayne, Ph.D.
> > Manager
> > Confocal and Specialized Microscopy Shared Resource<
> > http://hiccc.columbia.edu/research/sharedresources/confocal>
> >
> > Herbert Irving Comprehensive Cancer Center
> > Columbia University Medical Center
> > 1130 St. Nicholas Ave., Room 222A
> > New York, NY 10032
> > Phone: [phone]
> >
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> >
> >
> >
> >
> > ________________________________
> >
> > If you reply to this email, your message will be added to the discussion
> > below:
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012122.html
> > To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click
> > here.
> > NAML
> >
> >
> >
> > --
> > View this message in context:
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012271.html
> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>
>
> ________________________________
>
> If you reply to this email, your message will be added to the discussion
> below:
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012329.html
>
>
> To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click
> here.
> NAML
>
>
>
> --
> View this message in context:
> http://imagej.1557.x6.nabble.com/PhotoShop-Plug-Ins-Possible-with-ImageJ-tp5012395.html
> Sent from the ImageJ mailing list archive at Nabble.com.
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

[Ignacio Arganda-Carreras-2]

Hello Curtis and Ken,

The SIOX plugin (http://fiji.sc/SIOX) is actually an adaptation of a Gimp
plugin (http://www.siox.org/). You might want to have a look at it.

ignacio

On Wed, Apr 8, 2015 at 6:50 PM, Curtis Rueden <[hidden email]> wrote:

> Hi Ken,
>
> > Are PhotoShop plug-ins possible with ImageJ?  If No are GIMP plug-ins
> > possible?
>
> To my knowledge, no one has created a bridge between those respective
> programs' plugin mechanisms. Particularly for Gimp + ImageJ though, it
> should be doable for a skilled programmer. The main complication is that
> the ImageJ adapter would need to use native bindings to call into the GIMP
> API. Photoshop presents an additional complication in that it is closed
> source.
>
> Regards,
> Curtis
>
> On Tue, Apr 7, 2015 at 4:26 PM, KenO <
> [hidden email]> wrote:
>
> > Hi Curtis,
> > Thanks for the info!
> > Are PhotoShop plug-ins possible with ImageJ?  If No are GIMP plug-ins
> > possible?
> > Thanks again for your help!
> > Ken
> >
> >
> >
> >
> >
> > ________________________________
> >  From: ctrueden [via ImageJ] <[hidden email]>
> > To: KenO <[hidden email]>
> > Sent: Friday, April 3, 2015 10:06 AM
> > Subject: Re: Are Pixel Level Crops Possible with ImageJ?
> >
> >
> >
> > Hi Ken,
> >
> > > Do not know the difference between ImageJ and Fiji
> >
> > See the top of http://imagej.net/Fiji for an explanation. Please ask if
> > anything is not clear, so that we can improve the documentation.
> >
> > > As beginner this seems good to me, problem is the Windows PCs I use do
> > > not have Java 6 (or later) runtime installed. Is there a version that
> > > has everything needed in a portable Windows app?
> >
> > The Windows Fiji downloads include a Java JRE, so you do not need to
> > install one separately.
> >
> > However, the version bundled is Java 6 (1.6.0_24) which is very old, with
> > many bugs since fixed in Java 7 and Java 8. Personally I would advise
> using
> > a newer version of Java.
> >
> > We will be updating the bundles later this year to include a newer
> version
> > of Java, as time allows [1]. In the meantime, you can certainly replace
> the
> > version of Java in the "Fiji.app/java" folder with your own preferred
> > version of the JRE.
> >
> > Regards,
> > Curtis
> >
> > [1] https://github.com/imagej/imagej/issues/118
> >
> > On Tue, Mar 31, 2015 at 12:10 PM, KenO <
> > [hidden email]> wrote:
> >
> >
> > > Hi Theresa,
> > > Reason for late response is I had a number of projects to complete.
> > > Thanks for the tip!  "Put the cursor where you want to zoom. Press the
> +
> > > key repeatedly to reach the desired zoom level. Maximum zoom is 3200%"
> > > As an ImageJ beginner I have tried to read the user guide and man but
> > > found no mention which is why I posted.  Any recommendations concerning
> > > tutorials...
> > > Would like to use ImageJ on different Windows PCs without installing so
> >  a
> > > portable ImageJ is what I would like to download.
> > > Googled using "imagej portable windows" and found "Downloads - Fiji
> > > fiji.sc/Downloads Fiji Dec 22, 2014 - ImageJ will run on any system
> that
> > > has a Java 6 (or later) runtime installed. ... Windows XP, Vista, 7 or
> 8
> > > with Java installed from java.com; Mac OS X 10.5 "Leopard" ... ImageJ
> > and
> > > Fiji are distributed as portable applications."
> > > Do not know the difference between ImageJ and Fiji so went to Fiji
> > > (software) wiki  http://en.wikipedia.org/wiki/Fiji_%28software%29  and
> > > read "One of Fiji's principal aims is to make the installation of
> ImageJ,
> > > Java, Java 3D, the plugins, and further convenient components, as easy
> as
> > > possible. As a consequence, Fiji enjoys more and more active users."
> > > As beginner this seems good to me, problem is the Windows PCs I use do
> > not
> > > have Java 6 (or later) runtime installed.
> > > Is there a version that has everything needed in a portable Windows
> app?
> > > Thanks again for your help!
> > > Ken
> > >
> > >
> > >
> > >
> > > ________________________________
> > >  From: "Swayne, Theresa C. [via ImageJ]" <
> > > [hidden email]>
> > > To: KenO <[hidden email]>
> > > Sent: Monday, March 23, 2015 4:01 PM
> > > Subject: Re: Are Pixel Level Crops Possible with ImageJ?
> > >
> > >
> > >
> > > Hi Ken,
> > >
> > > Yes, you can do this.
> > >
> > > Put the cursor where you want to zoom.
> > > Press the + key repeatedly to reach the desired zoom level. Maximum
> zoom
> > > is 3200% -- more than enough to see pixels.
> > > Make a rectangular ROI.  Use the - (minus) key to zoom out as needed
> and
> > > adjust the corners.
> > > Image > Crop to complete the cropping.
> > >
> > > Hope this helps,
> > > Theresa
> > >
> > > On Mar 23, 2015, at 3:17 PM, KenO <[hidden email]<mailto:[hidden
> > email]>>
> > > wrote:
> > >
> > > Have some ~ 40 MP JPEGs that I want to be able to zoom  right in, eg
> > >400%,
> > > until I can clearly see individual pixels, and then set a crop line.
> > >
> > > Is this possible with ImageJ?
> > >
> > > If yes would appreciate suggestions.
> > >
> > > Thanks
> > >
> > > Ken
> > >
> > >
> > >
> > > --
> > > View this message in context:
> > >
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121.html
> > > Sent from the ImageJ mailing list archive at Nabble.com<
> > http://Nabble.com
> > > >.
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> > > ------------------------------------
> > > Please note:  My email address has changed to [hidden email]<mailto:
> > [hidden
> > > email]>.
> > >
> > > Theresa Swayne, Ph.D.
> > > Manager
> > > Confocal and Specialized Microscopy Shared Resource<
> > > http://hiccc.columbia.edu/research/sharedresources/confocal>
> > >
> > > Herbert Irving Comprehensive Cancer Center
> > > Columbia University Medical Center
> > > 1130 St. Nicholas Ave., Room 222A
> > > New York, NY 10032
> > > Phone: [phone]
> > >
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> > >
> > >
> > >
> > >
> > > ________________________________
> > >
> > > If you reply to this email, your message will be added to the
> discussion
> > > below:
> > >
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012122.html
> > > To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click
> > > here.
> > > NAML
> > >
> > >
> > >
> > > --
> > > View this message in context:
> > >
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012271.html
> > > Sent from the ImageJ mailing list archive at Nabble.com.
> > >
> > > --
> > > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> > >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
> >
> > ________________________________
> >
> > If you reply to this email, your message will be added to the discussion
> > below:
> >
> http://imagej.1557.x6.nabble.com/Are-Pixel-Level-Crops-Possible-with-ImageJ-tp5012121p5012329.html
> >
> >
> > To unsubscribe from Are Pixel Level Crops Possible with ImageJ?, click
> > here.
> > NAML
> >
> >
> >
> > --
> > View this message in context:
> >
> http://imagej.1557.x6.nabble.com/PhotoShop-Plug-Ins-Possible-with-ImageJ-tp5012395.html
> > Sent from the ImageJ mailing list archive at Nabble.com.
> >
> > --
> > ImageJ mailing list: http://imagej.nih.gov/ij/list.html
> >
>
> --
> ImageJ mailing list: http://imagej.nih.gov/ij/list.html
>

--
Ignacio Arganda-Carreras, Ph.D.
Institut Jean-Pierre Bourgin, UMR1318 INRA-AgroParisTech
Bâtiment 2
INRA Centre de Versailles-Grignon
Route de St-Cyr (RD10)
78026 Versailles Cedex France

Tel : [phone] - fax : [phone]
Website: http://sites.google.com/site/iargandacarreras/
<http://biocomp.cnb.csic.es/~iarganda/index_EN.html>

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html