Plugin to open Nikon .nd2 images in ImageJ

[Dhiraj Bhatia]

*H*ello,

 I have acquired some images in Nikon A1r confocal microsope where the
images are .nd2
I am trying to open them in ImageJ but its not happening. I installed Nikon
to Image6D plugin as mentioned in website but still some the images are not
opening.

Thanks in advance to please suggest a plugin to open .nd2 images in imageJ

Dhiraj

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[Jacqueline Ross]

Hi Dhiraj,

Have you tried installing the Bioformats plugin available here: http://downloads.openmicroscopy.org/bio-formats/4.4.10/ You need the one called loci_tools.jar This is already installed in FIJI but you need to install it if using standard ImageJ.

If you check out the supported formats (http://www.openmicroscopy.org/site/support/bio-formats4/supported-formats.html ), it does support .nd2 files and I have opened data from a widefield system which was .nd2.

Kind regards,

Jacqui

Jacqueline Ross
Biomedical Imaging Microscopist
Biomedical Imaging Research Unit 
School of Medical Sciences 
Faculty of Medical & Health Sciences
The University of Auckland
Private Bag 92019
Auckland 1142, NEW ZEALAND

Tel: [phone]
Fax: [phone]

http://www.fmhs.auckland.ac.nz/sms/biru/

-----Original Message-----
From: ImageJ Interest Group [mailto:[hidden email]] On Behalf Of Dhiraj Bhatia
Sent: Monday, 17 February 2014 7:50 a.m.
To: [hidden email]
Subject: Plugin to open Nikon .nd2 images in ImageJ

*H*ello,

 I have acquired some images in Nikon A1r confocal microsope where the images are .nd2 I am trying to open them in ImageJ but its not happening. I installed Nikon to Image6D plugin as mentioned in website but still some the images are not opening.

Thanks in advance to please suggest a plugin to open .nd2 images in imageJ

Dhiraj

--
ImageJ mailing list: http://imagej.nih.gov/ij/list.html

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ImageJ mailing list: http://imagej.nih.gov/ij/list.html